RNA id: TU441017


Basic Information

Item Value
RNA id TU441017
length 929
lncRNA type sense_over
GC content 0.36
exon number 1
gene id CI01000195_00132902_00133243
representative True

Chromosome Information

Item Value
chromosome id CI01000195
NCBI id null
chromosome length 1404554
location 130473 ~ 133243 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGACATGACAGTCATTCACAAAGTCCACACTAACTAGATTTTCGTTTGAAAAGGCATCTTTTTCTCTACGTTTTGGCCTTCCACACTGAGACGGCATTTTTATTAACAAAAAAGCTTTTTTGAAAACGCCATTTTCACTTTGTAGTGTGGACTGTGAAAACAGGTATAGGTATTTGAAAACGATGATGCATGTTTAATCATGTAACGCCAGATATTCATGTTTATACCGGTATTGTGCCTGTTATGTGCCATTCACTTTCACACAGTTGCTAAAATATGTTAATTTGCACACTCTTCATAGCGTGAGAACTTTATTATTGTTCTGTCTGTATCTCAGTGAGCTTTTATGAAGGTTTATGCATGTGCAGTAAGGTGAATTTTAGCGTTTTCCAACGTTTGTTTTGGAAAATGCTTGAAAACCCTAGTGTGGACGGAGACAGTTTTAAAAAAAGAAAGTCATTTTCAAATCTATCCGGATTAATGTAGACGTAGCCTCAGCCAGTGAACAAGCAATAAACTGTTCTGATCTTGAATGAATGTATTCTGCGCTAATGTAAAATGCCTCCAATTGACAATTGCATTCATGCTCCAAACAGCCATGTCCGCAATCGGCTATGCTCGTCACTGCAAAAAGCATTTTAAATACAAACCTTCAACTCTCTTCAATCTCTTTTTTTATTGACTACATGACCCACAGTCCATTACCGTCACTATGATTCACGTTCGTAACAGCGCACTTCACATTGAACATCAGCATTACTCTGCATTTCAATTTGCATTATTGTGCCCCCTTCCCTATTTACAGGGCTCTCTCAAAGTAAGCTTTTTTTTTTATTATTAAGTTTTTACATTGGCACAAAGAAAAATTCCAACAAAGTTATGGTTCAATTATTGCTTTCCTATTAAAATAATTAATAAAAGGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441033 lncRNA downstream 6627 123363 ~ 123846 (-) True G385534
TU441018 lncRNA downstream 8481 121237 ~ 121992 (-) False G385526
TU441020 lncRNA downstream 8581 121186 ~ 121892 (-) False G385526
TU441019 lncRNA downstream 8581 121237 ~ 121892 (-) True G385526
TU440430 lncRNA downstream 27110 103160 ~ 103363 (-) True G385076
TU441025 lncRNA upstream 57221 188622 ~ 194606 (-) True G385529
TU441012 lncRNA upstream 96067 227468 ~ 274671 (-) True G385523
TU441028 lncRNA upstream 144883 276284 ~ 281648 (-) True G385531
TU441139 lncRNA upstream 216821 348222 ~ 353014 (-) True G385599
TU441193 lncRNA upstream 254591 385992 ~ 388235 (-) True G385632
CI01000195_00109629_00111249.mRNA mRNA downstream 17209 108141 ~ 113264 (-) True CI01000195_00109629_00111249
CI01000195_00170752_00172146.mRNA mRNA upstream 38328 169729 ~ 172378 (-) True CI01000195_00170752_00172146
CI01000195_00230161_00241109.mRNA mRNA upstream 97702 229103 ~ 242123 (-) True CI01000195_00230161_00241109
CI01000195_00267729_00269461.mRNA mRNA upstream 135946 267347 ~ 269653 (-) True CI01000195_00267729_00269461
CI01000195_00277321_00278413.mRNA mRNA upstream 145473 276874 ~ 278738 (-) True CI01000195_00277321_00278413
CI01000195_00286609_00287289.mRNA mRNA upstream 154966 286367 ~ 287315 (-) True CI01000195_00286609_00287289
TU440424 other downstream 32954 97058 ~ 97519 (-) True G385070
TU441455 other upstream 1068955 1200356 ~ 1209651 (-) True G385869

Expression Profile