RNA id: TU441025


Basic Information

Item Value
RNA id TU441025
length 463
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G385529
representative True

Chromosome Information

Item Value
chromosome id CI01000195
NCBI id null
chromosome length 1404554
location 188622 ~ 194606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGAATATTGACTGTTCCCATTCGGACTACGCTTCCCATAGGCCCTCATTCCTGGGACTGATTGCGCACACACCTGCACCCCATCACGCTCACACTATTTAAGCCACACACACACACACACACTCACCGCGAAGTCTTGATTTGCCCCGGTGATCATTTCTGAGCGTTTTCTTGTGGATTGTTTATTCTGTTACTGTTGGACTGTTTACCCGTTGTGATTCTCTGCTGCCTGCCCTGAACCTTGCCTGTTTACTGGACTGTGTTTGCTTGCCGCCTGCCCTGATCTCCGCCTGTGACCCGTTACTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTTCCTGTTTATGTCTTTGCCTTTGCCGCCTGCCCTGATCTCCGCCTGTGACCCGTTACTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTTCCTGTTTATGTCTTTGCCTTTGCCCCTGTCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441017 lncRNA downstream 57221 130473 ~ 131401 (-) True CI01000195_00132902_00133243
TU441033 lncRNA downstream 64776 123363 ~ 123846 (-) True G385534
TU441018 lncRNA downstream 66630 121237 ~ 121992 (-) False G385526
TU441020 lncRNA downstream 66730 121186 ~ 121892 (-) False G385526
TU441019 lncRNA downstream 66730 121237 ~ 121892 (-) True G385526
TU441012 lncRNA upstream 32862 227468 ~ 274671 (-) True G385523
TU441028 lncRNA upstream 81678 276284 ~ 281648 (-) True G385531
TU441139 lncRNA upstream 153616 348222 ~ 353014 (-) True G385599
TU441193 lncRNA upstream 191386 385992 ~ 388235 (-) True G385632
TU441218 lncRNA upstream 224479 419085 ~ 419843 (-) True G385656
CI01000195_00170752_00172146.mRNA mRNA downstream 16244 169729 ~ 172378 (-) True CI01000195_00170752_00172146
CI01000195_00132902_00133243.mRNA mRNA downstream 55379 130883 ~ 133243 (-) False CI01000195_00132902_00133243
CI01000195_00109629_00111249.mRNA mRNA downstream 75358 108141 ~ 113264 (-) True CI01000195_00109629_00111249
CI01000195_00230161_00241109.mRNA mRNA upstream 34497 229103 ~ 242123 (-) True CI01000195_00230161_00241109
CI01000195_00267729_00269461.mRNA mRNA upstream 72741 267347 ~ 269653 (-) True CI01000195_00267729_00269461
CI01000195_00277321_00278413.mRNA mRNA upstream 82268 276874 ~ 278738 (-) True CI01000195_00277321_00278413
CI01000195_00286609_00287289.mRNA mRNA upstream 91761 286367 ~ 287315 (-) True CI01000195_00286609_00287289
CI01000195_00375179_00378443.mRNA mRNA upstream 179593 374199 ~ 378443 (-) True CI01000195_00375179_00378443
TU440424 other downstream 91103 97058 ~ 97519 (-) True G385070
TU441455 other upstream 1005750 1200356 ~ 1209651 (-) True G385869

Expression Profile