RNA id: TU441234


Basic Information

Item Value
RNA id TU441234
length 904
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G385672
representative True

Chromosome Information

Item Value
chromosome id CI01000195
NCBI id null
chromosome length 1404554
location 620228 ~ 621382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGTTTAAAGTCATTTAGTGAGTAAAAATGAGACAGACAATGTATACACTGAAAATGTGATTTGGTGTGCTATGTTTTACTCAAATGTTAATGAGTTACATTGTAAATGTATATTGGTGTGCATGTACTGAAATGTTGAATAAGTTGTAAACTGAAAGTTCATATTTAAGAAAGTAAAGTAACTGATGATTTCAGCTTTGTGTTTGCAAGGCCAGGTTGTTTGTTTGAAGATTAAATAAAAGCAAACAAAACACACACACAGTCTTCTTCGAGAGGAGGAGGTAGGAGTGGAGGTAGGGGTAGGGATAGGGGGTTGGGGAAGAAGTTCCATTAAGGTTCCCGATAAAGAACTGTTCTTTCCTTGCGGACATCCATATACTGATGCATTGCTTGGACTGGCGAGGCAATCAACCGGATTTTCTTCCCTGTGGTTATTCTCCATTCCATTGAGCTCTGTAGTTATATTTGTCTGCAAGAGTATGAACCATCCTTGAGAAAGTAATACATCAAGTGAAAGAACCAATATGAGCCCATTGACACAGAGCATTTAATAAATAACAGAGCATTAGACGGGTTAGTGGAGACTGTGTAGTGATGTAATGATAAATGTGACAGTGATCAATTTAAATCAAACAATCAGGGCAAATGTGCATTATAGCACATGCTAAAGATGTTCATGCAATGAAATTTGCCAGCTGCTTTTTATAAATACATTATAAATTAAACACACCCATACACAAGCAGTTTAATTTATATACAGTTACATATAGCAGCGGTTCCAAACCCTGGTCCCAATACTACACATTTTGGATGTCTCTCTAAAAGTCTCTACTAACGAGCTGATTAGATGAATTATGTGTGTTTAAATATGGGGACCCAGGTGGGAAAAAAAAGTACATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441178 lncRNA downstream 152872 456033 ~ 467356 (-) True G385617
TU441218 lncRNA downstream 200385 419085 ~ 419843 (-) True G385656
TU441193 lncRNA downstream 231993 385992 ~ 388235 (-) True G385632
TU441139 lncRNA downstream 267214 348222 ~ 353014 (-) True G385599
TU441028 lncRNA downstream 338580 276284 ~ 281648 (-) True G385531
TU441272 lncRNA upstream 23855 645237 ~ 645763 (-) True G385709
TU441285 lncRNA upstream 59323 680705 ~ 683279 (-) True G385722
TU441294 lncRNA upstream 80957 702339 ~ 704200 (-) True G385730
TU441170 lncRNA upstream 292159 913541 ~ 915824 (-) True G385609
TU441182 lncRNA upstream 337799 960379 ~ 961275 (-) True G385621
CI01000195_00540011_00558639.mRNA mRNA downstream 61589 539412 ~ 558639 (-) True CI01000195_00540011_00558639
CI01000195_00473436_00498770.mRNA mRNA downstream 121458 473382 ~ 498770 (-) True CI01000195_00473436_00498770
CI01000195_00375179_00378443.mRNA mRNA downstream 241785 374199 ~ 378443 (-) True CI01000195_00375179_00378443
CI01000195_00286609_00287289.mRNA mRNA downstream 332913 286367 ~ 287315 (-) True CI01000195_00286609_00287289
CI01000195_00277321_00278413.mRNA mRNA downstream 341490 276874 ~ 278738 (-) True CI01000195_00277321_00278413
CI01000195_00781053_00802555.mRNA mRNA upstream 159476 780858 ~ 802555 (-) True CI01000195_00781053_00802555
CI01000195_00823303_00824935.mRNA mRNA upstream 201547 822929 ~ 825488 (-) True CI01000195_00823303_00824935
CI01000195_00947211_00947449.mRNA mRNA upstream 325621 947003 ~ 947449 (-) True CI01000195_00947211_00947449
CI01000195_00959548_00967537.mRNA mRNA upstream 337055 958437 ~ 967700 (-) False CI01000195_00959548_00967537
CI01000195_00972854_00976498.mRNA mRNA upstream 350966 972348 ~ 976661 (-) False CI01000195_00972854_00976498
TU440424 other downstream 522709 97058 ~ 97519 (-) True G385070
TU441455 other upstream 578974 1200356 ~ 1209651 (-) True G385869

Expression Profile