RNA id: TU441272


Basic Information

Item Value
RNA id TU441272
length 297
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G385709
representative True

Chromosome Information

Item Value
chromosome id CI01000195
NCBI id null
chromosome length 1404554
location 645237 ~ 645763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTTTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACCACATACTGCATCAATTACAACATCATGGCTGCATAGAAGAAGGATCCGGGTACTGAAATGGCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441234 lncRNA downstream 23855 620228 ~ 621382 (-) True G385672
TU441178 lncRNA downstream 177881 456033 ~ 467356 (-) True G385617
TU441218 lncRNA downstream 225394 419085 ~ 419843 (-) True G385656
TU441193 lncRNA downstream 257002 385992 ~ 388235 (-) True G385632
TU441139 lncRNA downstream 292223 348222 ~ 353014 (-) True G385599
TU441285 lncRNA upstream 34942 680705 ~ 683279 (-) True G385722
TU441294 lncRNA upstream 56576 702339 ~ 704200 (-) True G385730
TU441170 lncRNA upstream 267778 913541 ~ 915824 (-) True G385609
TU441182 lncRNA upstream 313418 960379 ~ 961275 (-) True G385621
TU441165 lncRNA upstream 321573 967336 ~ 967390 (-) True G385608
CI01000195_00540011_00558639.mRNA mRNA downstream 86598 539412 ~ 558639 (-) True CI01000195_00540011_00558639
CI01000195_00473436_00498770.mRNA mRNA downstream 146467 473382 ~ 498770 (-) True CI01000195_00473436_00498770
CI01000195_00375179_00378443.mRNA mRNA downstream 266794 374199 ~ 378443 (-) True CI01000195_00375179_00378443
CI01000195_00286609_00287289.mRNA mRNA downstream 357922 286367 ~ 287315 (-) True CI01000195_00286609_00287289
CI01000195_00277321_00278413.mRNA mRNA downstream 366499 276874 ~ 278738 (-) True CI01000195_00277321_00278413
CI01000195_00781053_00802555.mRNA mRNA upstream 135095 780858 ~ 802555 (-) True CI01000195_00781053_00802555
CI01000195_00823303_00824935.mRNA mRNA upstream 177166 822929 ~ 825488 (-) True CI01000195_00823303_00824935
CI01000195_00947211_00947449.mRNA mRNA upstream 301240 947003 ~ 947449 (-) True CI01000195_00947211_00947449
CI01000195_00959548_00967537.mRNA mRNA upstream 312674 958437 ~ 967700 (-) False CI01000195_00959548_00967537
CI01000195_00972854_00976498.mRNA mRNA upstream 326585 972348 ~ 976661 (-) False CI01000195_00972854_00976498
TU440424 other downstream 547718 97058 ~ 97519 (-) True G385070
TU441455 other upstream 554593 1200356 ~ 1209651 (-) True G385869

Expression Profile