RNA id: TCONS_00018663


Basic Information

Item Value
RNA id TCONS_00018663
length 2171
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_009505
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42693455 ~ 42720384 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTATCTTTGCTGTGACAGTTCATTCCAAGAAAATAAGCATGgtcagctgtgtgtctatgaagagatAGCAGTCCATGGGTCCACTTCTGTGAGTTAATGATGGAAACACACCATCTAACTACACACACAGGATCACCAGCGTCCAGCTGTGTGTCTGTGAAGAGTCATCAGTCTATGGATCCACCGCTATGTTTTAATGATGGAAACACTACATCTGACTACAGGAACAGTTTAGTCCACTTCAAGAGAACAGGATCATCAGCTTCTAGCTGTGTGTCTGCGAAGAGTCATCAGTCTATGGATACACCACATTTTAATAATGGAAACACTACATCTGACTACAGATACAGcCAAGATATCCTTAACATATTTAGATCAAATCTAAAGAATAAGTTCCGGTGTCTGTATGAGGGAGCAACGGAACAAGGTAACCCAAGACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATTGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTCCTGCATGTATTTTTCCCTGAAACAAAAGATATTGACATTTTTagtgacaaatataaaatattgttcatctttgatggtctggacgAGTGTCGTCTTCCTCTAAATTTCAAAAGCAATGAGATTCTACAACATGAGACCAAAACATCATCAGTGGACGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATCCCCAAGACTCTCactcagatgtacacacacttcctGATGGCACAGATCAACACCAAAGACGTGAAGTATActggaaaaaaagacaaagacGTGATCTTCAAACTGGGGAAACTGGCGTATGAGCAGCTGGAAAGAggcaatgtgatcttctatgaggaAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCGTTCAGGAACATTTAGCAGCTCTATATGTGCACCTCTTATTCACAAACCACAACAGAAATGTGTTTGAACCAATTACTAAACAAACTTTGCACTCCATGATCAGGAACTGGTTTAAACCCAAGCCATCAAAACAAGTTTCAATATCTGAGCTGCATCAGAGAGCTGTAGATGAAGCTCTACAGGGTAAAAATGGAGAACTGGACCTTTTCCTCCGGTTTCTTCTGGGTTTGTCAGTCGAAAATAATCAGATTCTCCTACAAGGGCTAACAAAACAGACAAGATGCTGCCCAGACAGCAAGGAAACAGCTGATTACATCAAGAAGAAGATCAGGACCACTCACTCTCCAGAgaaattcattaatttgttctaCAGTCTGAATGAACTGGGTGATCATTCACTAGTGAAGGAAGTAACGCACTATCTGAGATCTGGAACAATCAAAAAGTCCAGACTCTCTTCTTCCCATTGGTCAGCTGTAGCTTTTGTGCTTctgacctcagaggaggagctgaaTGAATTTGATTTCAAGACGTTTGTTGAAGGAAACAATAAAGCTGAAAATTTGCGCGTTTTTAAGAAACTTGTGCCGGTGATTAAAGAGGCCAGATTAGTTCAGTAAGTATCAAAGAGAACA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-14 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000130902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019247 lncRNA downstream 151112 42551423 ~ 42557997 (-) True XLOC_009504
TCONS_00019246 lncRNA downstream 483349 42219583 ~ 42225760 (-) True XLOC_009501
TCONS_00019245 lncRNA downstream 483372 42219583 ~ 42225737 (-) False XLOC_009501
TCONS_00019244 lncRNA downstream 483377 42219583 ~ 42225732 (-) False XLOC_009501
TCONS_00018669 lncRNA upstream 354127 43073923 ~ 43119191 (-) True XLOC_009509
TCONS_00019248 lncRNA upstream 453346 43173142 ~ 43187543 (-) True XLOC_009511
TCONS_00019249 lncRNA upstream 790754 43510550 ~ 43512072 (-) True XLOC_009515
TCONS_00019250 lncRNA upstream 924048 43643844 ~ 43650523 (-) True XLOC_009517
TCONS_00018845 lncRNA upstream 1279734 43999530 ~ 44020074 (-) False XLOC_009523
TCONS_00018659 mRNA downstream 425279 42264891 ~ 42283830 (-) False XLOC_009502
TCONS_00018658 mRNA downstream 502219 42163356 ~ 42206890 (-) True XLOC_009500
TCONS_00018654 mRNA downstream 661087 42043102 ~ 42048022 (-) True XLOC_009493
TCONS_00018653 mRNA downstream 669917 41945310 ~ 42039192 (-) True XLOC_009492
TCONS_00018652 mRNA downstream 901738 41767675 ~ 41807371 (-) True XLOC_009491
TCONS_00018664 mRNA upstream 3330 42723126 ~ 42736433 (-) True XLOC_009506
TCONS_00018666 mRNA upstream 21476 42741272 ~ 42760110 (-) False XLOC_009508
TCONS_00018667 mRNA upstream 24665 42744461 ~ 42759005 (-) False XLOC_009508
TCONS_00018668 mRNA upstream 29491 42749287 ~ 42759005 (-) True XLOC_009508
TCONS_00018670 mRNA upstream 434948 43154744 ~ 43164591 (-) True XLOC_009510
TCONS_00018661 other downstream 180205 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018660 other downstream 425294 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018633 other downstream 1165669 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 1313036 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 2639982 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018665 other upstream 8674 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 931850 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 1297637 44017433 ~ 44017563 (-) True XLOC_009524
TCONS_00018697 other upstream 2030718 44750514 ~ 44750630 (-) True XLOC_009536

Expression Profile

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