RNA id: TCONS_00018664


Basic Information

Item Value
RNA id TCONS_00018664
length 3589
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_009506
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42723126 ~ 42736433 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCGCTGAAGATTAGACGAACCAGTGGTGCTCATGACAACACAATGAGTCACAAACAAACGTTGAAATATTTTTCTCCAGTATGCAGTTCAGTCCAGCAGGAGAGATCAGATTCAGCAGAGCCCAGCAGTGTGTCCGTTAAGAGTCACTGGTCTATAGATCCTCCACCACAAATGACAGAAAGAAGGGACAGTCTCAGCTTAGCTCTGCAGGAAAGATCAGATTCACCAGAGCCCAGTCATGTGTCCATGAAGAGTGACTGGTCTATAGATCCTCCACCACAAATGAAAGAGGAAAATAGGAGTTTGGTTCAGCAAGAGAGATCACCAAAatccagctgtgtgtctatgaagagagACTGGTCTATAGATCCTCCACCACAAATGAATGATGAAGACGGACAAAAACGTCTGAGTTTGGTTCAGCAGGAGAGATCAGATTCAGCTGAGCCCAGTCTTGTGTCCATGAAGAGTGACTGGTCTATAGATCCTCCACCACAAATGAAGGATGGAGACAGACAAAAGAGTCTCAGTTTGGTTCAGCAGGAGAGATCAGATTCACCAGAGCCCAGTCATGTGACCATGAAGAGTAACTGGTCTATTGATCCTCCACCACAAATGACAGACAGAAGGGACAGTCTCAGGCAAATCCCGCGACCCAGACCTGGTGCAGAAGAACCCATCAGTAAGAAAATGAAATATGACGAGTCTGTGATTAAATCACAAGAATGTATGGAAAACCCATCTCTCATCTTCAGCCATGAAGTCAACACGTTCAGAGTAAATCTACTAAAGAAGTTTCAGTGTCTGTATGAGGGAATGGTGACGCAAGATAACCCAGCACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATTGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTTCTGCAGCTCTTTTTCCCTGAAACAaaagaaattgacatttttagtgacaaatataaaatattgttcatctttgatggtctggacgAGTGTCGTCTTCTCTTAAATTTTAAAAGCAATGAGATTCTACAACATGTGACCAAAACATCATCAGTGGACGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAACgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATGGCACAGATCAACACCAAAGACATGAAGTATActggaaaaaaagacaaagacaTGATCTTCAAACTGGGGAAACTGGCGTATGAGCAGCTGGAAAGAggcaatgtgatcttctatgaagAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTATTCATCTGAGTGTTCAGGAACATCTAGCAGCTCTATATGTGCACCTCTTATTCACAAACCACAACAGAAATGTGTTTGAGCAAATGACCAAAAAGACTTCCAAAACTTTAGATATTTTGGATTGCTTTCACAGTAATTCAccagaaaatgttttattatctGAGCTGCATCAGAAAGCTGTGGATGAGGCTCTACAGAGTAAAAATGGACACCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTGTCATTGGAGTCTAATCAGATTCTCCTACAGGAACTAATGATAAAATTCAGAAGCAGCTCAGACAGCAGTGAAAAAACAGTTGAGTACATCAAGAAAAGGATCAATAACATTTGCCTTCCAGAGAAATCCATCAATCTGTtttactgtctgaatgaactgggGGATCATTCACTAGTGAAAGAAATACAACAGTACATGGATTATGGAACACTGGCTGAAACCAAAATCTCATGTGGTCAGTGGTCAGCTTTAGTGTTCATTTTATTGACAGTAGAGCAAGCAATGGATGTGTTTGAGTTGAATAAATTTATTGGATTGAAAAAATCCTCTGATGAGGTTCTTCGGAAACTCCTGCCAGTGATTAAAAAATCCAGATCAGCAATCATGGACGACTGCAACATCACGGCTGAAGGTTGTGCTTATTTGGCTTCAGCTCTTGGATCAAACCCCTCATATCTAAGAGAACTGGATCTGTCTGCAAATAAACTACAAGATTCaggaataaaaaaattatctaaagGACTTCAGGATTCTCATTGTAAACTGGAGAAACTGAATCTTTACCATTGTGGTGTCACAAATGAAGGTTGTGCTGCTCTGGCATCAGCACTGAAATCAAACCCTGAACATCTGAGAGATCTGAATCTGAGTGAAAATAAAATCGGAAATTTGGGACTCACGTGCCTTTCTGAAATACTGAAAAATTCTCTCTGTAAACTGGAGATATTGAGGTTGTGTCAGTGTGGAATCACAGATTGCAcagatttggcttcagctctGATATCAAACCCAgaacacctgagagagctggaatTGTCTCTGAATAAAATAGGAGACTCTGGAGTGACTGCTCTCTGTGCTGCATTTGAAGATCCCCGCTTCAAGTTGGAGAAACTGGGGTTGAGTGGTTGTGGTCTCACAGATGAAGGTTGTGCTGCTCTGACGTCAGCTCTCAGATCAAACCATGAACACCTGAGAGATCTAGATCTGAGTGGGAATAAAGTAGACAAAGAAGTCAAAGGTTCAATTCTACAGCGCATTTTGGAAAAACTGAATAATATTCAgattCTCAGTGTTTAATTCAGGATCTGTAGACGATGTATAAGGAGAAACATCATAGACACACAATCAACACACATTGAAGATGAAGACATTGATCACAGTCATGTGTGACTTGCTGTGAATGTTTTAGAATTTAGGGGAAGAGTAGTTTTAAGGTCGCAAACCTAACAACCattccagtgtttttttttgtctttatattttcAAATCATATACAATGATGTAAATATGAATGTCATTCCCCTGAAACACTTTTCTTTAGCAAAATGTTGAAAAATGGCAGCTAAtgatttctctctcacacacacacgcacgcacacacacacaagcacgcacgcacgcacacgcacgcacac

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-14 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000154379

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019247 lncRNA downstream 165129 42551423 ~ 42557997 (-) True XLOC_009504
TCONS_00019246 lncRNA downstream 497366 42219583 ~ 42225760 (-) True XLOC_009501
TCONS_00019245 lncRNA downstream 497389 42219583 ~ 42225737 (-) False XLOC_009501
TCONS_00019244 lncRNA downstream 497394 42219583 ~ 42225732 (-) False XLOC_009501
TCONS_00018669 lncRNA upstream 337490 43073923 ~ 43119191 (-) True XLOC_009509
TCONS_00019248 lncRNA upstream 436709 43173142 ~ 43187543 (-) True XLOC_009511
TCONS_00019249 lncRNA upstream 774117 43510550 ~ 43512072 (-) True XLOC_009515
TCONS_00019250 lncRNA upstream 907411 43643844 ~ 43650523 (-) True XLOC_009517
TCONS_00018845 lncRNA upstream 1263097 43999530 ~ 44020074 (-) False XLOC_009523
TCONS_00018662 mRNA downstream 2742 42693455 ~ 42720384 (-) False XLOC_009505
TCONS_00018663 mRNA downstream 3330 42709109 ~ 42719796 (-) True XLOC_009505
TCONS_00018659 mRNA downstream 439296 42264891 ~ 42283830 (-) False XLOC_009502
TCONS_00018658 mRNA downstream 516236 42163356 ~ 42206890 (-) True XLOC_009500
TCONS_00018654 mRNA downstream 675104 42043102 ~ 42048022 (-) True XLOC_009493
TCONS_00018666 mRNA upstream 4839 42741272 ~ 42760110 (-) False XLOC_009508
TCONS_00018667 mRNA upstream 8028 42744461 ~ 42759005 (-) False XLOC_009508
TCONS_00018668 mRNA upstream 12854 42749287 ~ 42759005 (-) True XLOC_009508
TCONS_00018670 mRNA upstream 418311 43154744 ~ 43164591 (-) True XLOC_009510
TCONS_00018671 mRNA upstream 472160 43208593 ~ 43238220 (-) False XLOC_009512
TCONS_00018661 other downstream 194222 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018660 other downstream 439311 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018633 other downstream 1179686 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 1327053 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 2653999 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018678 other upstream 915213 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 1281000 44017433 ~ 44017563 (-) True XLOC_009524
TCONS_00018697 other upstream 2014081 44750514 ~ 44750630 (-) True XLOC_009536

Expression Profile

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