RNA id: CI01000201_00394321_00396791.mRNA


Basic Information

Item Value
RNA id CI01000201_00394321_00396791.mRNA
length 775
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000201_00394321_00396791
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 394152 ~ 396995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTTAAGACTGATTCTGTTTCTTCTATCAATTAATGTAATTCCTGAGGAAGTGGATTAAAATCCGTCACATTCTCATTCCATGTTTAACTAGAAAAGGAAGTGAAGGTAATCAAACACAATAACTTTCAACAATTGTCATTGGGAAAATAGCAGACATCTGGGAATAATGGCCATCTGCACATCAAATGAAGCAACAGGCAGAAAAATTCATGCCACATATTTGAACCCCTCAAAAGGCAAAAATGAGTCCCTGATGTCCATGCTGACCCCATTTATGTGGCAGTTTTCCTTACGCTTCTCAAGGACGGTGTGTTCATTGTTCGGTCCACCTGCACTGGATCTGACTGCCGTCTCAGGGGATAAAACAACAAACAAAACAACTGAAGGAAGTCGAGTCGCGGCGGAAGAGAAGTCCGGGAACAGAATTCCTCAGATCATCTCGGTGCGTAAGTGGGAAAAAGTCTTAAAGCTTTGTGAATATAACCTCTCTCTGCACAATATCTCTTCAGACGGAGGAAATCCCAACAGAATTCCCAATATTCCCTATTTTGAGCTTGTGGTCACCTGACGCGTTCTTTTATCGCTGTAAATGTTTTTCTTAAGCTCAATCAGTGTTTTAATGGAGCCCCACATATAACTATAAATATACTAGATGTCAAAAAATGGATTTATGTTTCTCGTGATCTTAAAAACCTAAAAAGAAGTTTTCATCACTGCATTAATATTTTAACATGTGTGAAAGAGTCATAATGAAGAGTGCTTGCTACTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443865 lncRNA upstream 9050 340187 ~ 385102 (+) True G387807
TU443861 lncRNA upstream 39502 322822 ~ 354650 (+) True G387804
TU443781 lncRNA upstream 105620 240952 ~ 288532 (+) True G387741
TU443767 lncRNA upstream 125360 234891 ~ 268792 (+) False G387739
TU443772 lncRNA upstream 125360 234891 ~ 268792 (+) False G387739
TU443907 lncRNA downstream 9218 406213 ~ 406445 (+) True G387838
TU443923 lncRNA downstream 92410 489405 ~ 489702 (+) True G387848
TU443924 lncRNA downstream 101791 498786 ~ 527371 (+) True G387849
TU443885 lncRNA downstream 125914 522909 ~ 613385 (+) True G387819
TU443937 lncRNA downstream 191470 588465 ~ 589474 (+) True G387862
CI01000201_00254354_00285896.mRNA mRNA upstream 108090 254115 ~ 286062 (+) True CI01000201_00254354_00285896
CI01000201_00124616_00139299.mRNA mRNA upstream 254625 124616 ~ 139527 (+) True CI01000201_00124616_00139299
CI01000201_00098073_00121392.mRNA mRNA upstream 272358 98017 ~ 121794 (+) True CI01000201_00098073_00121392
CI01000201_00066137_00066334.mRNA mRNA upstream 327705 63803 ~ 66447 (+) True CI01000201_00066137_00066334
CI01000201_00043840_00048171.mRNA mRNA upstream 345572 43780 ~ 48580 (+) True CI01000201_00043840_00048171
CI01000201_00421647_00426906.mRNA mRNA downstream 23591 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00473896_00474283.mRNA mRNA downstream 76901 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00547876_00556142.mRNA mRNA downstream 150881 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00572895_00575129.mRNA mRNA downstream 175724 572719 ~ 575704 (+) True CI01000201_00572895_00575129
CI01000201_00576577_00577506.mRNA mRNA downstream 179582 576577 ~ 578901 (+) True CI01000201_00576577_00577506

Expression Profile