RNA id: CI01000201_00576577_00577506.mRNA


Basic Information

Item Value
RNA id CI01000201_00576577_00577506.mRNA
length 2046
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000201_00576577_00577506
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 576577 ~ 578901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACATCCGTCTACACAGTATCCCACTCAAATCCCATAGGAGAGATCGAGATATATATATATATAAAACATCTGAATGCACAGAATTGCTTAAATTCAGGCAGTTCAGATTCAAGAGCGTCACCCAATGATACCAAGCCAGTGTTTACGACACGGCGAGGCGCCGCGAGGCTTCCGATGCAGGCTGACGGTGTCTGTGGGAATCAAATGCTCGTGTCGCTCCTCCAGAGCCAGAACTCTTCTGACGGCTTCCTCAAACGCAACCGCCACATTCGTCGAATCTTTCGCGCTGGTCTCGAAATACGGGTATCCGCCGCTCTCCCTGCACCACTCCTGAGCTTCCTCGCTCGTCACCTGCCTCTCCGTCACGTCCACCTTGTTGCCCAGAACCACGAACGGGAAGCTGTCGGGCTCCTTGACGTCGGCGTAGTAGATGAACTCTTTCCTCCAGTTGACCAGGTTGTGGAAGCTCTGGCTGTCGTCCACGCTGAAGGTCAGCAGGCAGCAGTCGGAGCCGCGGTCCTTGTTGAGGAACTCCACGCCAATGGTGTGAAAGAGGTGCGCGTCGAACTTGTTGGTGACGTAGCGGTTCATGAGCGAGCTCTTGCCCACGCCGCCGTCGCCCAGAAGAATGACTTTAAGAAGAGATGATTTGGATGACATGTTTGTTGTCCTCGTCCTGTGAACTGAAAGAGCATTTAAGACTTTCATTTATTGAAAATATGATCCTGCAAGACAATTTATGTGTTTAGAATAATTAAGGTTTTTCTGCTCACTAAAGTTGCATTTATTTGATCAAAAAATACAGTACAAATTCTGAAATATTATTCCATTGTAAATCAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTTATATCCTAAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATTCTTCAGAAATCAGATATGATGATTTAAAAATAATAATAACACTTTTATTCATCAAGGACGCATTACATTGATCAAAAGTGACAGTAAATACGTTTATAATGTTATAAACGATTCTATTTCAAATAAATGCTGAACTTTCTATTCATCAAAGAATCCTGAAAAATAAAATGTATGACAGTTTCCACAAAAATATGACTGTTTTCAACATTGATAATAATCATAAATGTTTCTTGATCATCAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACACTTTACTATATATTCACATAGAAAACAGCTGTTTAAAATTATAATAATATTTCACTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCTTTGGTGGGAATATCTTGTCATCTTGGAGCTTTAGCGTTATGAATGTGAGTTACGGTAACATTTGGGAAACAAGGTTTCACCTACCTTCACTGCCTCAAATAATTCATCGTTCAAAATCTACAACAGAGAGTTGATCAATTAGAAATATGATCCCAAACTACTGGACTAGTAAAATTAAGATCTATGCAGTAGAATATTAATGTTAGTGTTTACACTTTACAATAATTCATGCTGAGATGCTTTACAGAAATACTTCACATTATTATTATTATTCATCATGCATATTGTTGCAGTACAATGTTGTTTTTATTTCTTAAAATGCAAAACCATAAAACCATTAAGAAGTTAATGGATGCCTAAACATAAAAATAATCAACACTTGTTGTAAAAACCCACATTAGTCAATCTTTACTACACTAGATAGATGCCAAGGTAACAGTATCCTCTGATATGGACAGTAATGTTGGACATAATGAAACATTCTGTGACTGAGCAGGGACAGACTCACGGTGGTTTCCTCTCAGCCGCTGGCCGTCGGTCATGTGCTCTTCTCTGTCCTGCATCACATGCAACAGTGTCCATTAGAATTCAGGCAACATGCAACACAGCCAAAGTTTAACCAGCTGGAATGGAGGCACGTACACAATGACGCACACACACACACACACACAAATGTGTGTGTGACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443924 lncRNA upstream 49206 498786 ~ 527371 (+) True G387849
TU443923 lncRNA upstream 86875 489405 ~ 489702 (+) True G387848
TU443907 lncRNA upstream 170132 406213 ~ 406445 (+) True G387838
TU443865 lncRNA upstream 191475 340187 ~ 385102 (+) True G387807
TU443861 lncRNA upstream 221927 322822 ~ 354650 (+) True G387804
TU443937 lncRNA downstream 9564 588465 ~ 589474 (+) True G387862
TU443896 lncRNA downstream 36030 614931 ~ 616868 (+) True G387827
TU443951 lncRNA downstream 44874 623775 ~ 623986 (+) True G387876
TU443903 lncRNA downstream 47047 625948 ~ 629376 (+) True G387834
TU443932 lncRNA downstream 65644 644545 ~ 645170 (+) True G387857
CI01000201_00572895_00575129.mRNA mRNA upstream 873 572719 ~ 575704 (+) True CI01000201_00572895_00575129
CI01000201_00547876_00556142.mRNA mRNA upstream 20322 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00473896_00474283.mRNA mRNA upstream 102141 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00421647_00426906.mRNA mRNA upstream 149671 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00394321_00396791.mRNA mRNA upstream 179582 394152 ~ 396995 (+) True CI01000201_00394321_00396791

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073696 True 645 mRNA 0.53 2 NC_007120.7 54695981 ~ 54704452 (+)
bowfin (Amia calva) AMCG00014201 True 606 mRNA 0.59 1 CM030128.1 4290944 ~ 4291549 (+)