Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU443663 |
| length | 887 |
| lncRNA type | inter_gene |
| GC content | 0.30 |
| exon number | 1 |
| gene id | G387650 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000201 |
| NCBI id | null |
| chromosome length | 704500 |
| location | 154840 ~ 155726 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU443623 | lncRNA | upstream | 10049 | 144084 ~ 144791 (+) | True | G387615 |
| TU443637 | lncRNA | upstream | 50791 | 47560 ~ 104049 (+) | True | G387629 |
| TU443767 | lncRNA | downstream | 79165 | 234891 ~ 268792 (+) | False | G387739 |
| TU443772 | lncRNA | downstream | 79165 | 234891 ~ 268792 (+) | False | G387739 |
| TU443774 | lncRNA | downstream | 79165 | 234891 ~ 268792 (+) | True | G387739 |
| TU443781 | lncRNA | downstream | 85226 | 240952 ~ 288532 (+) | True | G387741 |
| TU443861 | lncRNA | downstream | 167096 | 322822 ~ 354650 (+) | True | G387804 |
| CI01000201_00124616_00139299.mRNA | mRNA | upstream | 15313 | 124616 ~ 139527 (+) | True | CI01000201_00124616_00139299 |
| CI01000201_00098073_00121392.mRNA | mRNA | upstream | 33046 | 98017 ~ 121794 (+) | True | CI01000201_00098073_00121392 |
| CI01000201_00066137_00066334.mRNA | mRNA | upstream | 88393 | 63803 ~ 66447 (+) | True | CI01000201_00066137_00066334 |
| CI01000201_00043840_00048171.mRNA | mRNA | upstream | 106260 | 43780 ~ 48580 (+) | True | CI01000201_00043840_00048171 |
| CI01000201_00254354_00285896.mRNA | mRNA | downstream | 98389 | 254115 ~ 286062 (+) | True | CI01000201_00254354_00285896 |
| CI01000201_00394321_00396791.mRNA | mRNA | downstream | 238426 | 394152 ~ 396995 (+) | True | CI01000201_00394321_00396791 |
| CI01000201_00421647_00426906.mRNA | mRNA | downstream | 264860 | 420586 ~ 426906 (+) | True | CI01000201_00421647_00426906 |
| CI01000201_00473896_00474283.mRNA | mRNA | downstream | 318170 | 473896 ~ 474436 (+) | True | CI01000201_00473896_00474283 |
| CI01000201_00547876_00556142.mRNA | mRNA | downstream | 392150 | 547876 ~ 556255 (+) | True | CI01000201_00547876_00556142 |
