RNA id: TU443861


Basic Information

Item Value
RNA id TU443861
length 2588
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G387804
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 322822 ~ 354650 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGTAGAGGGACTATTTTATTTACTTAAAAGTATGTACAGGTTCTTTCCATGGAAATAATGGAACATGACTATATGTACAATTCACTTTTTTACATTGTGTCTTTACAAGTTGTATTTTATAAAACACTGACTTGCTAATACATGGAAAAACACACACACATACTTACATACAAATGAAGCGTTGCAATAACACACATAAATAAATATCAACATCAACATTCACTGACTGCCACAACAAATATCTCTACAGCCGAGAACATATATAGTTTACATCATTTCATCAAAAAACACGCATAAGTAATCATTTCATTAATAAACAAAACACTCTCTGTTAATCTGTAATGGAAAATTGCTAACATAATAATAAAAGGCTTCAAAGATGGATTTCAAAGGAACAGTTCAACCCAAAATACAAATCCAGTCATTATTTAATCACACAAACCTGTCTGCGGTTATGAGCTAGACTGCGTCTCCCAAAAGCATCATCGAAACCACCAGCACCAACGATCTACTTTGATGCTCGACTATGAAGAAAAGAGCTGAATAAAGACACGAGTTTGGGAAATATTGACAGAATAGGTTTGACATGCATCGCCGTCGATCTTAACTTGCTGAAATGGTTTCTGGGTGTGAATTCACACATGAAACGGTGCTGCAGCACAAGAGTTTGGGGTGATTTCTCAATCAGTGTTTGTGCGATGAAAACCGGAGATCTTGAGGTGAGGCGTTTAGAGCGGACGCTGAATATCCGCGTCTGATGAAAGCCGGATTAGCTGCACGTTGTGTCGCGTGTGCTGACCATTTCAGTGTTTCTCCACTGAAGACTTCTGATGGTGCTGCTGATGAAGTCGAGCTTCTGTGAGGAACAAAAACACATCTTCATTACACATGAAAACATCACGGCATCCTTAATGTCATGAATATAACTGTGCACTCACTATTTTAATAATTTTTACTGAACATCCCTAACTTAGACATCTGTCACATTATCAGACACACTTCTCATGTAAGTCTATAGGAATTCTGTGTTTTTTTATGGAATGTAATACAGTATAATATATATATTGTAGGGGTGTGATGAGATCTTGCGAGATTAAAATGTGACGAGATTTCTTGTCAAGGTGAAAAGCTGTCTCGTGACATTGTCATGACGAAGTGTGAGGGTGAAATTAGGATAGGATATGCTACCTAAACGTTTACATAACGCCTCCACTGTCGTTTTGCTTTTTATAGAAATAAAAGCCATTTAGCCATTCAGTTGGATAACGGTCGCTTCAATCCCATCCAGCTCATCCAACACAAGCTGCAGAGTCGTATGGGAATCGCCCATTCCGAGGCAATGGGAATCAAGAGTCGATTGCAAAAAGAATCGATTCCGAGGCATGGGAATCAAGAGTCGATTGCAAAAGTTGGAATTGATTCCATTCAGGGCAATCGATTTCAGTTCAATAACGCTAATCACTAATTCGCCTGTTGCTTGCTAATAATAATTGGAAATCCAATTAATTTCTGTGAACATGTTCTTTTGGACAGTTCGTTTCAATGAACCAGTTCAAAAAAATGATGAAGTTGAAGATTCGAAGTTGAAGATTCATTCTCTCTAAACCTCTAAACCCTGTGATTGGTCTACTCTGCTCTGATTGGTCAGATGGCCCAGTCTGTTGTGATTGGTCTACGTCATTTAATAATGGTGATTGGTCAAGCGCTTCAAGCGTGTTTGGGAAATGTCCCGCCCCTTACCATAACCACACTACTAACTAACTCAAGCAGGCCCCGCCCCTTTATTCTGTGTATGAATTATTTAAATGAGGAATATTGTGAAGAAAACTCAAGATGGAGGCGTTTCAGGAGTTCAGAAACACTGACACTGATATAAGAACTCCTCTAAAGTGTGTTTTCTTACTTTGCTGAAGTGGTGGCCGGCTGGGCGTCTGAAAGATCTTCTTCGTCGCAGGTCCTTCTCCTGCCGTGGTGATCACCTGCACCTCTAACCTGTAAAACGTGGCCGGTCGGAGGTTGGACACGACCAGGAGGTTATGATTCTGAAAAACATCACAAAACACAGCAGCGTTCACAGTCAGCACTGAAACACATCAGATCCTTCTTTTATATCACAATACAGTCATTTTTCCTCAAAATACAGTTCAGTTTTCTCTTTTCAGATTATTCAGATCAGATGGAATGATGAGATCTACTGCACATGAAAGAAGCTCGTGTAGATTTTCTCCAACACGAGGCGTCGTCCAGTGTCTTCATGTCGTGTTTGTAATGAGCTCACTGGAAACTCTTCAGATTTACTCGTTGAGAAGAATAAACATCACAGAATCCACATCATTCATACATGAATCCAATCTGATAATGATGACGTGCTCCAAACCGGCCTCAATATTCTGTCAGAAAACATCTGAGGAATCATGCAGATGAAAACCGGACAGAGTCGATTGGATGCATTTCACTCCGACTGAGTCGATTAAAGCTTCAGCAGAAGGACATGAATATGAAACGTAATGTGAGCGTGTTGTTGTTCATGGAGCATGAGGACTGTTTGTTCCTGAAGGAAAGCAGCCAGTGTTAGTGATGGAGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443781 lncRNA upstream 34290 240952 ~ 288532 (+) True G387741
TU443767 lncRNA upstream 54030 234891 ~ 268792 (+) False G387739
TU443772 lncRNA upstream 54030 234891 ~ 268792 (+) False G387739
TU443774 lncRNA upstream 54030 234891 ~ 268792 (+) True G387739
TU443663 lncRNA upstream 167096 154840 ~ 155726 (+) True G387650
TU443907 lncRNA downstream 51563 406213 ~ 406445 (+) True G387838
TU443923 lncRNA downstream 134755 489405 ~ 489702 (+) True G387848
TU443924 lncRNA downstream 144136 498786 ~ 527371 (+) True G387849
TU443885 lncRNA downstream 168259 522909 ~ 613385 (+) True G387819
TU443937 lncRNA downstream 233815 588465 ~ 589474 (+) True G387862
CI01000201_00254354_00285896.mRNA mRNA upstream 36760 254115 ~ 286062 (+) True CI01000201_00254354_00285896
CI01000201_00124616_00139299.mRNA mRNA upstream 183295 124616 ~ 139527 (+) True CI01000201_00124616_00139299
CI01000201_00098073_00121392.mRNA mRNA upstream 201028 98017 ~ 121794 (+) True CI01000201_00098073_00121392
CI01000201_00066137_00066334.mRNA mRNA upstream 256375 63803 ~ 66447 (+) True CI01000201_00066137_00066334
CI01000201_00043840_00048171.mRNA mRNA upstream 274242 43780 ~ 48580 (+) True CI01000201_00043840_00048171
CI01000201_00394321_00396791.mRNA mRNA downstream 39502 394152 ~ 396995 (+) True CI01000201_00394321_00396791
CI01000201_00421647_00426906.mRNA mRNA downstream 65936 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00473896_00474283.mRNA mRNA downstream 119246 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00547876_00556142.mRNA mRNA downstream 193226 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00572895_00575129.mRNA mRNA downstream 218069 572719 ~ 575704 (+) True CI01000201_00572895_00575129

Expression Profile