RNA id: TU443924


Basic Information

Item Value
RNA id TU443924
length 1754
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G387849
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 498786 ~ 527371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAACAAATGGTCATCTTGCACTGCTCTGCGATCCGCCACACATTACGGCGGAAGTACCGATCCAGTGTCTGCAAAGCGAACATGCAAAGACTAAGTCAAACGCCATAGAGTTTTTCGCCCTACCCTTCCACTTACATCACGCGTGACCTTTCCAACATGATTACGTAATGCGTGGCGCATTGCAGAGCAGTGCAAGACGAGCATTTGTGGTTAAAAAGTATATAATTTTTATTATTTTCAGAAAATGTCCGATGGTTTCTCTAGATAAGACTCTTATTCCTCGTCTGGGATCATGTAGAGCTCTTTGAAGCTGCACTGAAACTGACATTTGGACCTTCAACCCGTTGAACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACATTCATTTCTTCTCAACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTTCATTGAGAAGTCAACTAATCCTTTAAAGCGATAGTTTAGCCAAAAACAAAACTTCTATCATTATTCACTCACCTCAGAGTTGTTTCCAAACCTGTATGCTGTTATTTTTTTCTTTGGAAAACAAAGGTAGATGTTTTGAAGAAGCTCTTGAAGATTCTTCAATAACATCTTTTTTATGTTCTATTGAGAAAATAACTTACAGGTTTGGAATGAGTAAATTTGCTGAATTATTGCTTTGAATGCTCGTTGGTGATAACTTACAAGCCAACATCTTGCTTTTATTTACTCTTTGAAGTACAAAAGCATTTCCTCGTTAAGTCGACGTCGTTTCATCCTTTGTTTTTTATGGCATGAACTGAGGCTTGTGTTTCGAGTTCTCCAGAAATGTGGCAGGAACGGAAAAGCAGACGAACAGAACCGGCTTGATTCGGCCCGCTGCAGCTGACAGTGTGAGAATGCGTGAGAGAGAGCATTGGTTTGTTCTCGCTCACAGCACTGGCTTTGTGCATCTAGTTCATTGGCCGCATCTTTGTTTAACTCCAGAGACTGTTAACATGAAGTAGGTCCAGTGCGTTAGGACGTCCTGAAGAGAATAAAGCCAGTGAGTGAGGAGCCTTCTTCAATGAAGTGAGTCCTGCGCTGCAGCTGCGTGCAATCTATAGTTAGACAAACTCACAGGCCTTACTGTTACCCTAATGATAGACGTTTGATTCTGTGGATATTTTACAGATTTATGAATGGCTGTTTTTGTGTTATACAGAATGTGAGTGTTTCTCGCAAAATAATGAGTCTTCTTAACCCGATTATGCTTAATAAGACGACAACGCGTGTGGTAACACTATTCAAACTATTCAAACACCCATGCAATCTCATTCCCAAATGACAACACTTCTTCTATGTCTATTAAACCTTTACACAATCACACCGGAACATTGAAATGTGCGTTGGCGACGCCCTGAACCAGAGAGAGCCGTTGTCATGTTTAGGTATGAAACAGCTTTATAAACTGTTTTCAACCACACAGTATCGTTATATCTGTGTTGGAAATATTCAAATTATCACAGAAGTACTGGATAAAAGTTTATAGTTCAGATATGTCTACAGAAGCGATCAAAATAGAGTAAATCACCTTTGAAAGTAACTTGATGCTTCAAATAAAGATTGTATCAATTACATCGTTACACCAGTAGGTGGAGACAAATGGCTTAAAAATGTATGTCATTGAATCATTTATTCAAGAAATTTGTTCAAAAATGCTGATTCATNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443923 lncRNA upstream 9084 489405 ~ 489702 (+) True G387848
TU443907 lncRNA upstream 92341 406213 ~ 406445 (+) True G387838
TU443865 lncRNA upstream 113684 340187 ~ 385102 (+) True G387807
TU443861 lncRNA upstream 144136 322822 ~ 354650 (+) True G387804
TU443781 lncRNA upstream 210254 240952 ~ 288532 (+) True G387741
TU443937 lncRNA downstream 61094 588465 ~ 589474 (+) True G387862
TU443896 lncRNA downstream 87560 614931 ~ 616868 (+) True G387827
TU443951 lncRNA downstream 96404 623775 ~ 623986 (+) True G387876
TU443903 lncRNA downstream 98577 625948 ~ 629376 (+) True G387834
TU443932 lncRNA downstream 117174 644545 ~ 645170 (+) True G387857
CI01000201_00473896_00474283.mRNA mRNA upstream 24350 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00421647_00426906.mRNA mRNA upstream 71880 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00394321_00396791.mRNA mRNA upstream 101791 394152 ~ 396995 (+) True CI01000201_00394321_00396791
CI01000201_00254354_00285896.mRNA mRNA upstream 212724 254115 ~ 286062 (+) True CI01000201_00254354_00285896
CI01000201_00124616_00139299.mRNA mRNA upstream 359259 124616 ~ 139527 (+) True CI01000201_00124616_00139299
CI01000201_00547876_00556142.mRNA mRNA downstream 20505 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00572895_00575129.mRNA mRNA downstream 45348 572719 ~ 575704 (+) True CI01000201_00572895_00575129
CI01000201_00576577_00577506.mRNA mRNA downstream 49206 576577 ~ 578901 (+) True CI01000201_00576577_00577506

Expression Profile