Fish Transcriptome and Expression Database

RNA id: TU443903

Basic Information

Item	Value
RNA id	TU443903
length	3429
lncRNA type	antisense_over
GC content	0.46
exon number	1
gene id	G387834
representative	True

Chromosome Information

Item	Value
chromosome id	CI01000201
NCBI id	null
chromosome length	704500
location	625948 ~ 629376 (+)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome
species	grasscarp (Ctenopharyngodon idella)

Sequence

TATGTTGTCATGAAATCTGCACATAAAAGAATTAGAAAAATGATGTTTTAAAAATAATAATGAGTAGAAGAAGAATTATTATTTTGATGTGGTCATGAAATCTGTACACATAATAAATAATAGAATTAGCAAAATGCTGTTTTAGTCTGAGGACAAGCCAACTTTCCAAAAGTATGCCAAATACCCAGGAAAGAAAGTGTATTTGTCAATGAACTTCAACAAAAAAGTGGTTGTGTTTATTTACAGTTATATGGACATGAAAACGGAATCAAATCAACATTATATTAAAGGTTATATATTTCACTGTGGTCTTGAGACGGAAGCTTTGGAGTGTGTCCCAATCAATCACAGCGTTTCCTGGAAGAGTTTGTTGTACTGCCGACTGTCTGTGGACATGAGGCCTCTGAGACTGAACCAGAAGTACCTCTGTGCTTGAGGGTTCCTCGGCCACTCCAGGATTGATTTTTTATACAACCTCTTCCTCAGCTTGAGGTACTTGGAGTGACAAGGCATTTTCTCCAAGAATATCAGGACGATAACATCATTCCTCTCGTCCATGAGTCGCTGGTGGGCCAAATAAAACGCTGTCCTGAAGCTGCCGCTCCTGATGTACTGCCCCGTCAGGATGAAAACGGTGCGTTTACTCAACTGTATGCTCTGGGAAAGGTTTTCAATGAGGGGACAGCCAGGCACCCAATCCCGCTCCTCCAGACAGAGTTGCATCCGCGGATCGCCCCTGTCCTCCAGGTGAACGCGGAGCTCCTGCATGACCCACTCGTGAACGGCTGGATCCGTCGTGTCGTAGACCACGAAGGCGTCGTAGACGGTGCTGTTGGAGGACAGCCGGCGGTATCCCTTGAGTTTGGCCAAGCAGAAGTGGTAGATGTACCACACATCCCAGAGGAAGAGATGGCTGGAGATGGTGAGCGTGAGGATGCTAAGAATCACAGAGGTCAGGAAAATACACAGGATGATGGACAGGGAGTTGTGTTGGCAGGCCTGGACATTTAGGAAAATGACGCTTTGACCTTTTTGGGCACTCGGCGAAGAGCAGGTGACGTCCGTCGCGAGGCGCGGGATATTCACGGAGGTGCGGTTGATCCATCGGACGAACCACGTGGCGTTGCAAGAGCACACAAACCTGTTGTTGTTCAAGTACAAGGTCTCCAGGCGGTCAACAACATTTTCCGGGAAGCTCGATTCGTCGATGAACTGGATGCGGTTGTAACTGAGATCCAAGACCTTGAGGCTGAATGCATCCTTCAGGAAATTCGGAGTCAGTTTTGCAATGTTGTTCTTGTGTAGGACAAGAGTTTGGATTGATTTCGTGTAGTTAGTCAAGCACGCAGGAACCTCCGTCAGGTAATTCTCACTGAGGTCCAACAGCTGTAGGTTTTTAAGGTTCACAAGGCCTTCCCATTTAAATGACTTCAACCTGTTGTTAGTGATGTAGAGTTCTGTGAGGGTGTCTGGAAGACCTTCGAAAACACCTTGTGGGATGAAGTTCAGGTTGTTTTGAGAAATGTCAAGAGTCTTCAAGGCCACAAGTTTCTTAAAGTAGCTGACGTACCTCGTGTCTCCATCCCTCCACAACATATCAAGACGGTTGCCTCTAAACTCCAAATGTTCCAGAGTAAAACTCTCCATTTCGGTGTTCGTGGATGTGGATATCTGGTTGTCGTTCATGATTAACTTTCGCAGCTTAATCAGGCTTTTTGTAAAGTTCAACATGTGAGTTAAACCCTCAGCCACGAAGAAATGGCTGTTACGGCTGATATCCAGAATGATCAAGCTGCTCAGTTCCTGGAACGCTGAAGAGAACATCAAATCCAGACGATTGTCGGAAAAGTCTAGGTATTGTAAATTCTTCAACTGGACAAACTCAGAACCGTTCAAACTCTGGCTCATGGCGTTCCCGGAGAGATTTAAACACCTCAGCTCACCAAGATCCAGAAATCTGGAATGAAGGAAAAAGATGTTATTCCTGCTAATATCCAACGTTTTTCCAAAGGAACTACATTCGTTGTTGAAAGGACTTGTAATCCAGAGTTCCTTGTCTTTGTATTTGCAGCTGCGTGCAAATTCGTCATAGAGGAAATAGTGGATATCCTTCACTTCTCCATTGTGGTACTGGGCACCTTGCGACATTGGGGAACCATAATGTTTTTCTCTGTGGTTAGAATGCCAAGTCGTGTATCCTCCTTCAGAGGGCATTGAGATTTTGTTGTCGGACAAGTTGATGATTCTGAAGCTTTTCAGTTTCTTCAGGAGACTGAGGTTTGCTATTTTTATGAAGTTTGTGCCAAGGTCAATGAATTCCAGGTTGCTCAAATTAATCAATGGGTTGAGGTCTCGCTCGGTGAGTTCTTGAAACACGTACCCTCTGATTCTCAGGACCCTCAGAGATTTAAGGCGGCTGAATGATCTCGAAAGGTTGAGAGATGTGGGATACACCTGGAGCTCGAAGTTGAAAGACAGATCCAACTCTTCCAGATTGGGCAACAAAAAAGGAAAAGAGGTGCATGTTATCTCCTTAGCCAAAAAATTGCTTGAGAGGTCTAGAAGACTAAGGCCCGTCAGGTTTTGAAACCATTCTGAAGGTATATTCGTTAAAGAGTTGCTATGAAGTCGAAGAGTCTTGAGGTTCTTCAGGGTCTTGAAGGAGTTGGCGTGTATCTGAAGGGGAGCATTATTTGGGCATGGATTGCATGGGAACGGTGCATTATAACAGCGTGGACAATTCCCACTCAAGTCCAGTATTTCCAACTCTGTCAGGTTGTGAAAGTCCTCCTCCGTTATTGTGTGAATATTGTTGTTGTACAGATACAGCTCTTTGAGGCTAGATGGTAGTTGGCGCGGGACATAGGACAAGTTGTTAGACTTCAGAGAAAGCAAAGTCATCTTGTCGAGCTGCACAAACGCATCCTTTTCAATGTAGTATGACTTGTTGCACGGGTTCCGGAAGTAGCAGTTCTGGCCGAGATACAGCCTCTGGATATTAGTCAGCTCTGTCAGATTCTCCTTAAGAATTGAATAAATACTGTTGACCTCGAGACTCAGAAGCACTATGTTTGGAGGAAGGCCTTTGGGTATGCTGGAGAGCTGGTTACCATCCAGGTAAAGCGACTTGAGGTTCTTTAGCTTCCAGAAGGTTCCGTTGTCAATCGTGACGCTCTGGGTGCAGACGCGGTCTTTGGGACCGACCTTGATCGGCACACAGTTGCAGCGGAGGTCGATCTCAGTGATGTTGTGCAGTTCGTGGAATGAATCGTTCATGATGTGGGGTATGTGGTTGATGGTTAGTGTCAGGTTGGTGGTGTTCATTGGGATTCCCAGAGGAACTTCGGTTAGGTCTCGTTCGGTGCAGTTGACGCTGACCTCGGTCCCGTTACTAGCCAGAGAAACGTCACACTTCAGACTTTTGGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU443951	lncRNA	upstream	1962	623775 ~ 623986 (+)	True	G387876
TU443896	lncRNA	upstream	9080	614931 ~ 616868 (+)	True	G387827
TU443885	lncRNA	upstream	12563	522909 ~ 613385 (+)	True	G387819
TU443937	lncRNA	upstream	36474	588465 ~ 589474 (+)	True	G387862
TU443924	lncRNA	upstream	98577	498786 ~ 527371 (+)	True	G387849
TU443932	lncRNA	downstream	15169	644545 ~ 645170 (+)	True	G387857
TU443956	lncRNA	downstream	32794	662170 ~ 663023 (+)	True	G387881
CI01000201_00576577_00577506.mRNA	mRNA	upstream	47047	576577 ~ 578901 (+)	True	CI01000201_00576577_00577506
CI01000201_00572895_00575129.mRNA	mRNA	upstream	50244	572719 ~ 575704 (+)	True	CI01000201_00572895_00575129
CI01000201_00547876_00556142.mRNA	mRNA	upstream	69693	547876 ~ 556255 (+)	True	CI01000201_00547876_00556142
CI01000201_00473896_00474283.mRNA	mRNA	upstream	151512	473896 ~ 474436 (+)	True	CI01000201_00473896_00474283
CI01000201_00421647_00426906.mRNA	mRNA	upstream	199042	420586 ~ 426906 (+)	True	CI01000201_00421647_00426906

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

economic fish

Basic

Function

Jbrowse2

Neighbor

Expression

RNA id: TU443903

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

Expression Profile

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences