RNA id: TU443956


Basic Information

Item Value
RNA id TU443956
length 673
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G387881
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 662170 ~ 663023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGGTAAAAGAGGTCCCTCACTGTGACAAATCTCCCCCTTTACACTGAAGCCATTATTACATACAACCAATACTGCCAGAGTACAAACAATAAATGTTTAACATCTCTGACTGCGTCTCGCTGTAATTACTCAATCTTTTTTGTCTGGCCAGTGAAGGACACACAGCAGCAACATTCCAGCACATGAACCCGATCGCTCATGTATGCGCCGCATCAATAATTCAGTCTGGAGAGCAGAGCTCATCATGTTCCCTCGCAGCGTTTCCATTCCAAACGTCCCGCCCTTCTTCATCTGGACGGACACTATTTAACTGTAAATGTGAGGAAAAAAACTTTATCGCATCAATTTCCTTGTGACACAGAAAGTTAGAAATAACTAACACATATCGGTTGTGTTCTAAAACCTAGTGGGCAACCTACATAGGCAGCAACCTTCTAAGGGAGCATCTTACTTGAAATAAGGCATATGGATACGTGAAGGTTTGGAGGCAGAAATTCTCAATTTCCCAAACTCACCGCAACCCGCCAAAATAAGAGTTCAGAAAACTATCTGCAGATACACACACAAACTCACGGCTCTTCACCGCAACCCGCCAAAATAAAAGTTCAGAAAACTATCTGCAGATACACACACAAACTCACGGCTCTTCACCGCAACCCGCCAAAATAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443932 lncRNA upstream 17000 644545 ~ 645170 (+) True G387857
TU443903 lncRNA upstream 32794 625948 ~ 629376 (+) True G387834
TU443951 lncRNA upstream 38184 623775 ~ 623986 (+) True G387876
TU443896 lncRNA upstream 45302 614931 ~ 616868 (+) True G387827
TU443885 lncRNA upstream 48785 522909 ~ 613385 (+) True G387819
CI01000201_00576577_00577506.mRNA mRNA upstream 83269 576577 ~ 578901 (+) True CI01000201_00576577_00577506
CI01000201_00572895_00575129.mRNA mRNA upstream 86466 572719 ~ 575704 (+) True CI01000201_00572895_00575129
CI01000201_00547876_00556142.mRNA mRNA upstream 105915 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00473896_00474283.mRNA mRNA upstream 187734 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00421647_00426906.mRNA mRNA upstream 235264 420586 ~ 426906 (+) True CI01000201_00421647_00426906

Expression Profile