RNA id: TCONS_00018849


Basic Information

Item Value
RNA id TCONS_00018849
length 637
lncRNA type sense_over
GC content 0.43
exon number 2
gene id XLOC_009539
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45300527 ~ 45313039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtGTGTTATTTTACGGTTCTCGGGAAAGCCGTGCTGTCTGACGTCATGTTAATTGTGTATCAGGAagtaaaacttatttttaaaaaaataaaaacgcgcATTCTGTGAGATCAGTCTCCGCTCGTGTTCAGAgatcagtgtgtttgtttgtgtgttggcCATATATGACACTCCCAAAAATCCCTCTACTCTTCCATTTTCAGTATGAAGGCATGTCGGAGGGACATATGAAGGAGATCAGGAAGGATTTCCCTAGAAGATTCATGATGTCAGAAATGGAGAGGATAGATATCACTGCtgCTATGGAGACCACACTGTGGAATTGAGGGAAGCAAGAGCCGAGCGTCAGGAGTGAGCCGCAGCCAGAAGAGAAAGTTATCGACCAACAAAAGGAAAAGAAGTGCGCTGAGAAGAAGTGATCTGGAAATGCCCTAACATTTGAGTGTGTTCCAGTAAAGCTCGTCGTCCTGCTGCCTCTGACTAATCATGTGAAAGGTGGAGATCCACCGTACAGTGTTTGACTATTGGTAAACACACTTCTACTTCCTGTACAGTAGAGAGAAGCAGTCTATTAGTGGTGTTTACTACGGTAAGTgtgctattgttgttgtttacactTCAAGATAAAGATCTAGA

Function

GO:

id name namespace
GO:0046173 polyol biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018848 lncRNA downstream 117487 45191684 ~ 45192115 (-) True XLOC_009538
TCONS_00019252 lncRNA downstream 915828 44370567 ~ 44393774 (-) True XLOC_009530
TCONS_00019251 lncRNA downstream 1186495 44119233 ~ 44123107 (-) True XLOC_009528
TCONS_00018684 lncRNA downstream 1289528 43999530 ~ 44020074 (-) False XLOC_009523
TCONS_00018850 lncRNA upstream 52312 45365247 ~ 45397908 (-) False XLOC_009542
TCONS_00018851 lncRNA upstream 52312 45365247 ~ 45407001 (-) False XLOC_009542
TCONS_00019255 lncRNA upstream 52373 45365308 ~ 45397906 (-) False XLOC_009542
TCONS_00019256 lncRNA upstream 52373 45365308 ~ 45398029 (-) False XLOC_009542
TCONS_00019257 lncRNA upstream 52373 45365308 ~ 45398035 (-) False XLOC_009542
TCONS_00018699 mRNA downstream 62691 45008585 ~ 45246911 (-) False XLOC_009537
TCONS_00018698 mRNA downstream 62691 45008585 ~ 45246911 (-) False XLOC_009537
TCONS_00018700 mRNA downstream 199591 45086932 ~ 45110011 (-) False XLOC_009537
TCONS_00018701 mRNA downstream 199591 45105007 ~ 45110011 (-) True XLOC_009537
TCONS_00018696 mRNA downstream 645890 44646592 ~ 44663712 (-) True XLOC_009535
TCONS_00018703 mRNA upstream 25688 45338623 ~ 45356635 (-) True XLOC_009541
TCONS_00018704 mRNA upstream 101948 45414883 ~ 45510977 (-) True XLOC_009543
TCONS_00018705 mRNA upstream 214346 45527281 ~ 45538773 (-) True XLOC_009544
TCONS_00018706 mRNA upstream 355916 45668851 ~ 45674213 (-) True XLOC_009546
TCONS_00018707 mRNA upstream 1320340 46633275 ~ 46673161 (-) True XLOC_009555
TCONS_00018697 other downstream 558972 44750514 ~ 44750630 (-) True XLOC_009536
TCONS_00018686 other downstream 1292039 44017433 ~ 44017563 (-) True XLOC_009524
TCONS_00018678 other downstream 1657841 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018665 other downstream 2581016 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018661 other downstream 2780698 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

//