RNA id: TCONS_00018850


Basic Information

Item Value
RNA id TCONS_00018850
length 660
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id XLOC_009542
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45365247 ~ 45407049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCGATCAGATGTGAGCGTAAATCGTTGCGTTTGTTTCCGTCCACATGGAGAAACACGGAAACGTCCGTCGCGCGCTGAACCCATACAAATCCGGAGACCGGACAAATTAACGGGAGCGGAGCAGCGGTCGAGCCGTTGCAAACGGGACTGACGAAAGAAAATCAACAACAGATCTGCACCGGGACTGTATTTCTTCCTGCGGTGTTTCTCGATCTGGACTATCCCATCATCAATCACCTCCTCATACTCTGACTTTTCTCCAAAAAACTGCACCGGGACCATgatGAAGCTGCTCTTCACTCTCCTCTGTCTCTGCCTTTTAAAGATGGGTGGCTTTTCTTCATCTGTCAATCAAGACGACGTCCAATCAGAGGCGTCTCCAGAGGTCTGCGCGCATGAGCTTCAATCACACGGTGCACATCTACATCTGCAGAGATACTGCTGATCACGCACAACAGAGAAATAAATGAAGGAAACAGACCATGGATCAGCTGGAGATGGTTATAAGGGTGATGCGAGACTTGGGTTTCTATCTTTTTGGTTTCTTCTATTGGTTGTTTAAAAGATGCAGAACAATTATGAGATCAAATTGAAACCACAAAAACATTTTACTTGAAtgttgcttaaaaaaataaaataaaataaataaataaaaat

Function

GO:

id name namespace
GO:0030237 female sex determination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019254 lncRNA downstream 52208 45300527 ~ 45313039 (-) False XLOC_009539
TCONS_00019253 lncRNA downstream 52253 45300527 ~ 45312994 (-) False XLOC_009539
TCONS_00018849 lncRNA downstream 52312 45309602 ~ 45312935 (-) True XLOC_009539
TCONS_00018848 lncRNA downstream 173132 45191684 ~ 45192115 (-) True XLOC_009538
TCONS_00019252 lncRNA downstream 971473 44370567 ~ 44393774 (-) True XLOC_009530
TCONS_00019259 lncRNA upstream 160259 45558167 ~ 45560856 (-) True XLOC_009545
TCONS_00019260 lncRNA upstream 378285 45776193 ~ 45861721 (-) True XLOC_009547
TCONS_00019261 lncRNA upstream 813075 46210983 ~ 46213819 (-) True XLOC_009548
TCONS_00018853 lncRNA upstream 859637 46257545 ~ 46268918 (-) True XLOC_009549
TCONS_00018854 lncRNA upstream 892364 46290272 ~ 46291643 (-) False XLOC_009550
TCONS_00018703 mRNA downstream 8612 45338623 ~ 45356635 (-) True XLOC_009541
TCONS_00018702 mRNA downstream 44774 45311936 ~ 45320473 (-) True XLOC_009540
TCONS_00018699 mRNA downstream 118336 45008585 ~ 45246911 (-) False XLOC_009537
TCONS_00018698 mRNA downstream 118336 45008585 ~ 45246911 (-) False XLOC_009537
TCONS_00018700 mRNA downstream 255236 45086932 ~ 45110011 (-) False XLOC_009537
TCONS_00018704 mRNA upstream 16975 45414883 ~ 45510977 (-) True XLOC_009543
TCONS_00018705 mRNA upstream 129373 45527281 ~ 45538773 (-) True XLOC_009544
TCONS_00018706 mRNA upstream 270943 45668851 ~ 45674213 (-) True XLOC_009546
TCONS_00018707 mRNA upstream 1235367 46633275 ~ 46673161 (-) True XLOC_009555
TCONS_00018708 mRNA upstream 1287526 46685434 ~ 46718759 (-) False XLOC_009556
TCONS_00018697 other downstream 614617 44750514 ~ 44750630 (-) True XLOC_009536
TCONS_00018686 other downstream 1347684 44017433 ~ 44017563 (-) True XLOC_009524
TCONS_00018678 other downstream 1713486 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018665 other downstream 2636661 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018661 other downstream 2836343 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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