RNA id: TCONS_00019255


Basic Information

Item Value
RNA id TCONS_00019255
length 708
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_009542
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45365247 ~ 45407049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGATCAGATGTGAGCGTAAATCGTTGCGTTTGTTTCCGTCCACATGGAGAAACACGGAAACGTCCGTCGCGCGCTGAACCCATACAAATCCGGAGACCGGACAAATTAACGGGAGCGGAGCAGCGGTCGAGCCGATTTCTTCCTGCGGTGTTTCTCGATCTGGACTATCCCATCATCAATCACCTCCTCATACTCTGACTTTTCTCCAAAAAACTGCACCGGGACCATgatGAAGCTGCTCTTCACTCTCCTCTGTCTCTGCCTTTTAAAGATGGGTGGCTTTTCTTCATCTGTCAATCAAGACGACGTCCAATCAGGTGAGAGTCCTGCCGGATTAAGAAGCTGTGATTGGTCGCCCTCTggataatttaaaatgaatgtaaaattaaATCTCTCGCCCTCGCCCGGAGACTATATCCATCCTCCTAATCTATCCGCAACCAATCAGATCTCGCATTTAAATAATTGATCCAATCAGCAGAGGCGTCTCCAGAGGTCTGCGCGCATGAGCTTCAATCACACGGTGCACATCTACATCTGCAGAGATACTGCTGATCACGCACAACAGAGAAATAAATGAAGGAAACAGACCATGGATCAGCTGGAGATGGTTATAAGGGTGATGCGAGACTTGGGTTTCTATCTTTTTGGTTTCTTCTATTGGTTGTTTAAAAGATGCAGAACAATTATGAGATCAAATTGAAAC

Function

GO:

id name namespace
GO:0030237 female sex determination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019254 lncRNA downstream 52269 45300527 ~ 45313039 (-) False XLOC_009539
TCONS_00019253 lncRNA downstream 52314 45300527 ~ 45312994 (-) False XLOC_009539
TCONS_00018849 lncRNA downstream 52373 45309602 ~ 45312935 (-) True XLOC_009539
TCONS_00018848 lncRNA downstream 173193 45191684 ~ 45192115 (-) True XLOC_009538
TCONS_00019252 lncRNA downstream 971534 44370567 ~ 44393774 (-) True XLOC_009530
TCONS_00019259 lncRNA upstream 160261 45558167 ~ 45560856 (-) True XLOC_009545
TCONS_00019260 lncRNA upstream 378287 45776193 ~ 45861721 (-) True XLOC_009547
TCONS_00019261 lncRNA upstream 813077 46210983 ~ 46213819 (-) True XLOC_009548
TCONS_00018853 lncRNA upstream 859639 46257545 ~ 46268918 (-) True XLOC_009549
TCONS_00018854 lncRNA upstream 892366 46290272 ~ 46291643 (-) False XLOC_009550
TCONS_00018703 mRNA downstream 8673 45338623 ~ 45356635 (-) True XLOC_009541
TCONS_00018702 mRNA downstream 44835 45311936 ~ 45320473 (-) True XLOC_009540
TCONS_00018698 mRNA downstream 118397 45008585 ~ 45246911 (-) False XLOC_009537
TCONS_00018704 mRNA upstream 16977 45414883 ~ 45510977 (-) True XLOC_009543
TCONS_00018705 mRNA upstream 129375 45527281 ~ 45538773 (-) True XLOC_009544
TCONS_00018706 mRNA upstream 270945 45668851 ~ 45674213 (-) True XLOC_009546
TCONS_00018707 mRNA upstream 1235369 46633275 ~ 46673161 (-) True XLOC_009555
TCONS_00018708 mRNA upstream 1287528 46685434 ~ 46718759 (-) False XLOC_009556
TCONS_00018697 other downstream 614678 44750514 ~ 44750630 (-) True XLOC_009536
TCONS_00018686 other downstream 1347745 44017433 ~ 44017563 (-) True XLOC_009524
TCONS_00018678 other downstream 1713547 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018665 other downstream 2636722 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018661 other downstream 2836404 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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