RNA id: TU446031


Basic Information

Item Value
RNA id TU446031
length 1101
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G389597
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 142077 ~ 146208 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCAGATTGCATCAAAAAGATCTTCATTTGTGTTNNNNNNNNGGATGAAAGTCTTATGGATATGGAACGACATGAGAGTAATGACAGAATTTTCCTTTTGTGGGTGAACTATTCGTTAAACACTTCAAAAATGTTAGATGGACATCCAACAAAAACATTTCAGAAACAAATTCCATGAATAAAGTTTTTTGGTTACATTTTGAGACCTTATTAAAGGGATAGTTCACACAAAAATGAAAACTGTCATCATTTACTCACCCAAAAACACCCTGACAAACATCACAAACACACCTGTGAGCCTTTTCATTAGAAACCATGAGCTTTTATTGGAATGTTTCACCATTACACTTATAAATCCCACCCATGTGTCATCTGCCTTTATCAAAACAAGCTAATACTGGCACAATCATCATTCCACTCAAGCACATGTTCAGATGAATGGTCTGCAATCATGAATAAATGACATCTGAAGGTAAAAGCAGTTGAGTATCTAAAATGCCATGAATAAAGAAAGAGACAAAGAAAATCCAGTATATGGGATTTTTTTTTTTTTAGTCACAAATTTGAGAGATTGAAAGCAAGTATCAAAGTAGAGCAGGAAACACTTTGCTTTAATGTGGTAGGGGTCAAGGGTCATAAAACATTAAAATAAAGGACAGGATGGAGCCGTACACACAGTTCAACATGTGATTCTTTACACCTCAAAGACAATAATGATGCCGGTCCAGTTATCATCATCAATCTGAGTTCAGTTACATGCTGTCACACATTCACTGAAGACTGAAGCTGTTTCGGTTGCTTACACTGGGATAAAAATCAACAAAAACTTATGTTTGTATGTTTCCAGCAGTTGGGTCTTTTCACCGTTGGACACATGTCTACTCTGAGGGGACCAACAATAGAAAAAGTATTTCTCATTTCTGCACCTGCACCCTACCATCCCATAAGTGTGCGTGTGTGCGATAGTTTAGGACATGACTCCGAACACAGGGTTGTGGCGGCAGATGCTCGGGCCGATCTCCTCGTAGTCCTTCTTGGTGTGACACACCTGGTAGAACTCCGGCTGAAAAGAAACAAAGAGTTTAATTGTTTAAATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446068 lncRNA upstream 7500 99628 ~ 134577 (+) True G389632
TU446058 lncRNA upstream 71923 69585 ~ 70154 (+) True G389623
TU446028 lncRNA upstream 87712 54138 ~ 54365 (+) True G389594
TU446081 lncRNA downstream 11347 157555 ~ 158909 (+) True G389642
TU446097 lncRNA downstream 149275 295483 ~ 295961 (+) True G389658
TU446111 lncRNA downstream 180753 326961 ~ 327166 (+) True G389672
TU446123 lncRNA downstream 197580 343788 ~ 344204 (+) True G389684
TU446174 lncRNA downstream 359309 505517 ~ 505814 (+) True G389728
CI01000206_00029745_00051502.mRNA mRNA upstream 90156 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 118444 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00178241_00202393.mRNA mRNA downstream 31937 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00220974_00253610.mRNA mRNA downstream 74766 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00385497_00393583.mRNA mRNA downstream 239289 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00426915_00452327.mRNA mRNA downstream 280586 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00475810_00481198.mRNA mRNA downstream 329602 475810 ~ 481222 (+) True CI01000206_00475810_00481198
TU446214 other downstream 414937 561145 ~ 565669 (+) True G389767
TU446171 other downstream 433623 579831 ~ 583898 (+) True G389725
TU446222 other downstream 460127 606335 ~ 608065 (+) True G389774

Expression Profile