RNA id: CI01000208_00508002_00511190.mRNA



Basic Information


Item Value
RNA id CI01000208_00508002_00511190.mRNA
length 1353
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000208_00508002_00511190
representative True

Chromosome Information


Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 507148 ~ 511257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAATGCCAGGTTTATTACAAGGAAGCTAGAGCAGAGGTGGAAAGAATAATATACATAATATTAAAAAAAAATGTTTTTTTAAGATAACAGAATTTATATTTTTAGTTGTAGAGTTCAGTGTACATACAGTGTCACTTGCGCTTGGATGTCAGTCAAAACCTTCTTAACTAATAAATTAAAAATATATAATTTTGCAAAAGAAAATTGCAGATGCATGGTGATATAGATGAAATATATTGTGAAATAAATGCATATTAAAGTATTTAATGAGTTTCTCAGTTCACCTGTGTTTCATCCTCTGTCAGCGGCCTCCTCCAGAAATGTTGAAATCTTTGGAGCTTCCCCTTTGTTGTAGAGGGGGTTTTCTGTCGCCCCTGAAATTACAGAACAATATTTATCAATATCTGTTTACCATTATAGAGATCAAAACGTGTTTGAAATAGTTTCAGCTAATTTTCGCGCTCCATGTAAGTGACGTCACCGATTAACGGTACAGCAAGCGCATACTTTTAGGTTAAATAAATAAATAAGTTTACTATCATCCATTGACAGTTTGCCAACAAAACTATCAAAACATCTCATCTACACATAAAGATGACATTAAAAGCCTAAACGTTCATTAAACAACATGAACCTCTTAAACGGTTGAGATGCTAACGGACTTTTTCAAAGACACTAAATCATTTCTTTGAAGTAAATATTCAACAGAAGTGTGTCAATTACACTTAAAAAAAAAGCGTCAGGAACAGTTTTATATATTATTTGTGTGATTTTATGGACTAAACTTACCTAAAATCAGTGAAAACAACAGCGAGATGAAGTTTTGCTGCTTGACGTCTCCCCGTTTCCATGGCAACTCAGATCCGCTCCAGTTTTTGCTATCTGGCTGGTGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATACTCTGACTCTACGCTGTTTAGATAAGTTTACAAACCCATCAATCCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAGTCAAACTACAGAGATGATCATCTCTACTGTCTCAAAGTCACATGAGGGTTTCTACTACTGCAAACACCCAGAGGAAGGAGAGTCGCCCAAGAGATGGATCTCAGTCAGAGTGTCTCATTCAGTCTCTCAGATCTCTGTCCTCAACATACTCGGTTCTGTACTGGCGGCTTGTCCATATCTGCTTGTGACAGTCGTGCTGATTTACAAATGCTGCAGAATAAGAGAATTCATAATATGTCCTGTGGTTCTGACTGGCGTGTGAAACTTTGCATACTAGTGTTCACATGAGAACTGCTAATTGTTTGACATTGTGATGGTTTTTAACGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU447223 lncRNA upstream 4007 475836 ~ 503141 (+) True G390631
TU447217 lncRNA upstream 21446 483020 ~ 485702 (+) True G390625
TU447213 lncRNA upstream 47730 458666 ~ 459418 (+) True G390621
TU447226 lncRNA upstream 49167 456197 ~ 457981 (+) True G390634
TU447224 lncRNA upstream 53993 439332 ~ 453155 (+) True G390632
TU447328 lncRNA downstream 37469 548726 ~ 549309 (+) True G390729
TU447336 lncRNA downstream 41403 552660 ~ 552867 (+) True G390737
TU447348 lncRNA downstream 160632 671889 ~ 672382 (+) True G390749
CI01000208_00479959_00498664.mRNA mRNA upstream 7677 479145 ~ 499471 (+) False CI01000208_00479959_00498664
CI01000208_00388124_00395613.mRNA mRNA upstream 111227 387628 ~ 395921 (+) True CI01000208_00388124_00395613
CI01000208_00314910_00326888.mRNA mRNA upstream 180243 313308 ~ 326905 (+) False CI01000208_00314910_00326888
CI01000208_00298383_00300398.mRNA mRNA upstream 206193 298054 ~ 300955 (+) True CI01000208_00298383_00300398
CI01000208_00269407_00286854.mRNA mRNA upstream 220117 269236 ~ 287031 (+) False CI01000208_00269407_00286854
CI01000208_00533761_00535474.mRNA mRNA downstream 22354 533611 ~ 535474 (+) True CI01000208_00533761_00535474
CI01000208_00554756_00555762.mRNA mRNA downstream 43312 554569 ~ 557097 (+) False CI01000208_00554756_00555762
CI01000208_00571370_00591616.mRNA mRNA downstream 60113 571370 ~ 592484 (+) True CI01000208_00571370_00591616
CI01000208_00611303_00616477.mRNA mRNA downstream 100046 611303 ~ 616800 (+) True CI01000208_00611303_00616477
CI01000208_00622771_00646633.mRNA mRNA downstream 111514 622771 ~ 647166 (+) True CI01000208_00622771_00646633
TU447215 other upstream 8587 497603 ~ 498561 (+) True CI01000208_00479959_00498664
TU447206 other downstream 43353 554610 ~ 558695 (+) False CI01000208_00554756_00555762
TU447207 other downstream 43353 554610 ~ 558695 (+) True CI01000208_00554756_00555762
TU447202 other downstream 144306 677372 ~ 677519 (+) True CI01000208_00674776_00677559
TU447210 other downstream 148341 679966 ~ 680035 (+) False G390620
TU447211 other downstream 148341 675917 ~ 676057 (+) False CI01000208_00674776_00677559

Expression Profile