RNA id: TU447203


Basic Information

Item Value
RNA id TU447203
length 148
RNA type TUCP
GC content 0.46
exon number 1
gene id CI01000208_00674776_00677559
representative True

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 674722 ~ 678098 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTGTTACTCAGTTTCTTTGGAATGTGCATTTCTAGATTTATGATATATTTCCGTGGTTGGGCCCATTCCTGAAAAACAAAAGGATTATTGTAGAAAATATTGTCCAAAGTCGAGTGGAGATGACGAAGTTGATCAAAGGGCTGCTGGAGACTCTGAATACACAGGACCGCAGAGGGTTTGTCGACTCCTTTCTCATCCGCAAACAGAGTGAAGAGAAATCTGGCAAGAAGGACACATACTTTCATGATGAGAATCTAATGATGACTGTGACAAATCTGTTTGTTGCTGGTACTGACACGACAGGAACGACTCTGCGCTGGGGTTTGATGCTCATGGCCAAATACCCTCATATACAGGATCGAGTTCAAGAGGAGATTGACCGAGTGATTGGTGGACGTCAGCCAGTGGTGGAAGACAGGAAGAAATTACCGTATACAGATGCTGTGATTCATGAAACTCAGAGACTGGCCAACATAGTGCCCTTGAGTCTGCCACATATAACTAGCTGTGACATTCACTTCAATGGATACTTCATCAAGAAGGGTACCACTGTCATTCCTCTGCTGACGTCCGTTTTGAAGGATCCAAGCGAATGGGAGAAACCGAACAGCTTTTACCCAGAACACTTCCTAGATGAGAAGGGCCAGTTTGTCAGGAGAGATGCTTTCATGCCCTTTTCTGCAGGTCGAAGGGTTTGTTTGGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACTTCCCTCCTTCAGAGCTACCGCTTCACAACTCCACCTGGAGTGTCTGGAGATGATCTGGATCTCAAAGGAATAGTCGGGGTCACGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447336 lncRNA upstream 113050 552660 ~ 552867 (+) True G390737
TU447328 lncRNA upstream 116608 548726 ~ 549309 (+) True G390729
TU447223 lncRNA upstream 162776 475836 ~ 503141 (+) True G390631
TU447217 lncRNA upstream 180215 483020 ~ 485702 (+) True G390625
TU447213 lncRNA upstream 206499 458666 ~ 459418 (+) True G390621
CI01000208_00655853_00657320.mRNA mRNA upstream 8388 654013 ~ 657529 (+) False CI01000208_00655853_00657320
CI01000208_00622771_00646633.mRNA mRNA upstream 18751 622771 ~ 647166 (+) True CI01000208_00622771_00646633
CI01000208_00611303_00616477.mRNA mRNA upstream 49117 611303 ~ 616800 (+) True CI01000208_00611303_00616477
CI01000208_00571370_00591616.mRNA mRNA upstream 73433 571370 ~ 592484 (+) True CI01000208_00571370_00591616
CI01000208_00554756_00555762.mRNA mRNA upstream 108820 554569 ~ 557097 (+) False CI01000208_00554756_00555762
CI01000208_00679245_00685898.mRNA mRNA downstream 1726 679245 ~ 685908 (+) True CI01000208_00679245_00685898
CI01000208_00688872_00693800.mRNA mRNA downstream 11353 688872 ~ 693800 (+) True CI01000208_00688872_00693800
TU447206 other upstream 107222 554610 ~ 558695 (+) False CI01000208_00554756_00555762
TU447207 other upstream 107222 554610 ~ 558695 (+) True CI01000208_00554756_00555762
TU447215 other upstream 167356 497603 ~ 498561 (+) True CI01000208_00479959_00498664

Expression Profile