RNA id: CI01000208_00674776_00677559.mRNA


Basic Information

Item Value
RNA id CI01000208_00674776_00677559.mRNA
length 1553
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000208_00674776_00677559
representative False

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 674722 ~ 678098 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAGCTTATGGTTGCATCTGGTAGATGCTTAGCAGTTAAGGATTGTAAAATGGCTGTAATCGAGTCACTTCTGCAGTTTCTCAGCGCAGGTACATTACTGGGCGCTTTGCTGTTGATTCTGGTTTTGTATTCGCTTTCCTCTGGATCCAGATCTCAGAAAGAAGGGAAAGAGCCACCGGGACCCAAACCACTGCCGCTGCTGGGGAACCTGCTGACCCTTGACCTCAAGAGACCCTTTGACGCCTTTTGTGAGCTGTCCAAAACATATGGAAATATGTTCCAAGTGTTTTATAGTCCTAAAAAAGTTTTGGTACTAGTTGGATACAAAACAGTTAAACAAGCACTTGTGAACTATGCAGAAGAGTTTAAGGACCGGGATATTATGCCTGGATTCTGGATAGTATCCAAAGGACATGTGTCTCAAAAAACAGTCACCGTCCTTATCCACATCTTGGCAGAAATAAGCAGAAAAATAAAGCAGTTTAGAGCTTTCAAAATGGTAGACACCAAACACAAAATTATGACCACAATTCATGGAATCCTTTTTTCCAATGGAGAGAACTGGAAAGAGATGAGACGCTTCGCTCTCAGCAACCTGTGGGACTTCGGGATGGGCAAGAGAGGAAGTGAAGAGAAAATCATAGAGGAAATTCAGCATCTGAAAGGAGGGTTTGATAAGTTTGAAGGATCCACTGAGAGACATTTGTTTGCTCTTCACAGGGAAAGCGAATGGGAGAAACCGAACAGCTTTTACCCAGAACACTTCCTAGATGAGAAAGGCCAGTTTGTCAAAAGAGATGCTTTCATGCCCTTTTCTGCAGGTCGAAGGGTTTGTTTGGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACTTCCCTCCTTCAGAGCTACCGCTTCACAACTCCACCTGGAGTGTCTGGAGATGATCTGGATCTCAAAGGAATAGTCGGGGTCACGTTGAATCCGTCCCCACACAAGCTGTGTGCAATCAGACGCTCCTGATCCAAGAAAATTTCATCAGTCCTTAGAAGAAAACACAGAAACAAATAATCTCTCCTTATCTAAATAAGAACTGGGATCGTTGTTGCACTAATTTTATGCATTGTGATCAAATGCACTTAATCGAAAATAAGAGCAAATAATTTAATGACTTCGCTGGTTGTTTTGCCATTTGCTATGAATTTTAAATGCCTCTTAAAATATTGAACTGAAATTGAATTTGACAGATGACCTGCTGTAAACTATACGATTGTTAATGCCCTGAATGAAAATCTGACTGAAGCATTATCAGCCGTTTATATATCTGAGTGTGTATACCATGGCATGTTTTGTTTACTGTAGATCAGTAGTTAGTCAGTTCTGTTACACTCAATTCAGTCTTGTTTGGATCTTAAGCTATTAATTCAGTACTTGCATGTATTGTCAGTTTATAATTTATTAAAATTTCTCATTCAAAATCATTCCAATTGGTCATATGTATTACAACCAGTAATCTATGAAACTTTACATGATTAGAGAACAAAAAGACCTGAAACTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447348 lncRNA upstream 2340 671889 ~ 672382 (+) True G390749
TU447336 lncRNA upstream 121855 552660 ~ 552867 (+) True G390737
TU447328 lncRNA upstream 125413 548726 ~ 549309 (+) True G390729
TU447223 lncRNA upstream 171581 475836 ~ 503141 (+) True G390631
TU447217 lncRNA upstream 189020 483020 ~ 485702 (+) True G390625
CI01000208_00659672_00669637.mRNA mRNA upstream 5067 659631 ~ 669655 (+) False CI01000208_00659672_00669637
CI01000208_00655853_00657320.mRNA mRNA upstream 17193 654013 ~ 657529 (+) False CI01000208_00655853_00657320
CI01000208_00622771_00646633.mRNA mRNA upstream 27556 622771 ~ 647166 (+) True CI01000208_00622771_00646633
CI01000208_00611303_00616477.mRNA mRNA upstream 57922 611303 ~ 616800 (+) True CI01000208_00611303_00616477
CI01000208_00571370_00591616.mRNA mRNA upstream 82238 571370 ~ 592484 (+) True CI01000208_00571370_00591616
CI01000208_00679245_00685898.mRNA mRNA downstream 1147 679245 ~ 685908 (+) True CI01000208_00679245_00685898
CI01000208_00688872_00693800.mRNA mRNA downstream 10774 688872 ~ 693800 (+) True CI01000208_00688872_00693800
TU447206 other upstream 116027 554610 ~ 558695 (+) False CI01000208_00554756_00555762
TU447207 other upstream 116027 554610 ~ 558695 (+) True CI01000208_00554756_00555762
TU447215 other upstream 176161 497603 ~ 498561 (+) True CI01000208_00479959_00498664

Expression Profile