Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019288 |
| length | 1032 |
| RNA type | mRNA |
| GC content | 0.58 |
| exon number | 6 |
| gene id | XLOC_009591 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 39498 ~ 53136 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0006400 | tRNA modification | biological_process |
| GO:0035600 | tRNA methylthiolation | biological_process |
| GO:1990798 | pancreas regeneration | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0003323 | type B pancreatic cell development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061712 | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase | molecular_function |
| GO:0035596 | methylthiotransferase activity | molecular_function |
| GO:0035598 | N6-threonylcarbomyladenosine methylthiotransferase activity | molecular_function |
| GO:0051536 | iron-sulfur cluster binding | molecular_function |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ko03016 | Transfer RNA biogenesis |
| id | description |
|---|---|
| ZDB-GENE-040426-1443 | Predicted to enable N6-threonylcarbomyladenosine methylthiotransferase activity. Acts upstream of or within pancreas regeneration and type B pancreatic cell development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in diabetes mellitus; gestational diabetes; and type 2 diabetes mellitus. Orthologous to human CDKAL1 (CDK5 regulatory subunit associated protein 1 like 1). |
| ensembl_id | ENSDART00000163710 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021856 | lncRNA | downstream | 67888 | 121024 ~ 122041 (+) | True | XLOC_009593 |
| TCONS_00021857 | lncRNA | downstream | 74299 | 127435 ~ 129026 (+) | True | XLOC_009594 |
| TCONS_00021858 | lncRNA | downstream | 133438 | 186574 ~ 190975 (+) | False | XLOC_009596 |
| TCONS_00021668 | lncRNA | downstream | 135255 | 188391 ~ 189042 (+) | True | XLOC_009596 |
| TCONS_00019293 | lncRNA | downstream | 366986 | 420122 ~ 513158 (+) | False | XLOC_009598 |
| TCONS_00019287 | mRNA | upstream | 35253 | 1471 ~ 4245 (+) | True | XLOC_009590 |
| TCONS_00019289 | mRNA | downstream | 14933 | 68069 ~ 71108 (+) | False | XLOC_009592 |
| TCONS_00019290 | mRNA | downstream | 14988 | 68124 ~ 69570 (+) | True | XLOC_009592 |
| TCONS_00019291 | mRNA | downstream | 99046 | 152182 ~ 168150 (+) | True | XLOC_009595 |
| TCONS_00019292 | mRNA | downstream | 168603 | 221739 ~ 229482 (+) | True | XLOC_009597 |
| TCONS_00019295 | mRNA | downstream | 760644 | 813780 ~ 817937 (+) | False | XLOC_009601 |
| TCONS_00019298 | other | downstream | 1159538 | 1212674 ~ 1212788 (+) | True | XLOC_009605 |
| TCONS_00019299 | other | downstream | 1167310 | 1220446 ~ 1220562 (+) | True | XLOC_009606 |
| TCONS_00019306 | other | downstream | 1687801 | 1740937 ~ 1741058 (+) | True | XLOC_009612 |
| TCONS_00019309 | other | downstream | 2230920 | 2284056 ~ 2284174 (+) | True | XLOC_009616 |
| TCONS_00019314 | other | downstream | 2676237 | 2729373 ~ 2729489 (+) | True | XLOC_009620 |
