RNA id: TCONS_00021858


Basic Information

Item Value
RNA id TCONS_00021858
length 2544
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id XLOC_009596
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 186574 ~ 190975 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAGTAATGTTACTGTCACATTCTAAGACTAAAAAttgtaaatgtcattaaaatagcTTGACTCCAAATGTCCAAAGACTCGTGTGCACTGAACACAAATCTCAGTGTTGTGGTATGACACAGTGCTGTGCTGATGGAGACGTATGTTCACATATTAAAGGAAACCCTGAAGAAAACAACCAACCAGCCTCATTCTAGAGCAAATATGAAGCAGCGCGGTGAATCAGCCTGAATATTCCCCAGCTCTTTGCATTTTTGTGTCTCATCAGGTCATTCATTCAGCAGTGCGGGGTGTAATAAACACGCTTCACCTCAGGGCTTTGGCAAAATGAAAAATACCTGATGCTCAGGCCAATGCTTTGGCTGGAAAATACAGAAATTGGCAGAGCAATCATTCTTGCGGCTTCACAAGAGCCCGGCGGCGTCTCTTCAAACAGCGCTTGTTTAAGTGCGTCTGTAGTGGAGTTAGAGGTTTATTTCCCTGAGATACTGACTGGAACTTCCACTTTAGTCCTGATAAACCATCAGCCAGACTGTTTACTAACTCATCCCAAGCTGATTTCAGAAGCACACTTATTGAGCTGAAGATCTGAGCCGCATGAATAGGAGACTCCTAATAGGTTTTCAAGATGCCACAGTCTCAATAGAGGGAATGCCAACAATCCCTTCCCATTCTaggagaaataaataaaagtgaatgggaatgcaatctgtccatccatcagcCGCTGTTGCTGTATAATGCCGTCTGGCTCTCGTTCAATACGGAGGTGACAGAAAGCTGCAGACGGATGAGAAGCGCAGGCCTGCTGTAATATATTGGCTGGATTTGAAAGGTGCGGAGGCTCAGATAGCTGTAATATACACCCTGATATACATGTATAAAGTCTGCGGGATCACAATGGAATCAGCGCTTCTATCTGCGGCCCATGAAAAGCCTCTGAATTCCATTACTGCCTTCTGAAACGCCGCCTGCTTGCTTTGCATTACAAAGTGAGCATCCCATTCCCATGAAGGTTTATGGTTTTCCGGCGTCGAGCTGATGGAGTTAATCCTATCAAAGCGTATCGTAGTTGAGCTTAAATGAACATGTGGACAACACATCGGCTGAAGAACTCCACACAAGCTAAACTCATTCATTGAATTTGAGTGCTGAGATGCACATTGTGTTTAAGCATTTATTTTCCTGCATTTTATTGAGGTAAGATCTAGAATTAATGTTAAACTGACATGTTTGATATAGTTACTGTAACTCGTAAGTTTAGTGGTGGACGGTGGAGCTGCTTTTATTTTCGTGAATGGTGTTTTTTATTGGCTTTGGAGAAGCAGAGTTGGATCAACTCACTGTCATTAATGTACACCAATGCAAACTGGAAAGTCTTTATGAGTAGAAAGCCTCCCACTCCCCTGTTTCCTCCTGGAAGGATGTGTGGTGGCGTATTCCTCCTGTGGCTGTACACCTTTGGTCTACTAGACTTGATAAGTGACAGCTGAACTGTCTAGTCTGCTGAACGATGTCTACTCTATAACAGACTCAACATTTCCCAGTTCTACTTGCTCCATGAGGTGCATTTCTTATTGTAGCTGGCAATTTCATGATTAGCCGGGCACTGGTTCTTCAGCCGGCCCTGAACCGAAGACACCACCTGCTCCCCTTGGGGCTGGCACAGATGAGCTCCTGGACCTGCACTGTGCTCAAGCTGCCCATGGAGGAGTTCTGGAGGTTCTGGATGAAGCAACCCGGCTGAAGAACAGTGTGGTGTTACAGCTCACCTTCGGTTCATCTGAACACTCTTCATGGCTCTCTTTCTCCTTCACAGAATACTTGGAGCCTGCTCCAGGGATGAAGGATCAGCGgactgattggaatgttgttccaggatcagcctaaatgttaatccaggaacgtCCCTGATGAAATCAGATTACCCTCTCTTAATGCAGGAACCGATGTGAGGTCTTCCAGAAGCTGAGGACTCCTTAGCCCGGACAGGTCACTGTACTTCATCATCATGAGCGAATCACGACTCCAGCTATGCCTTTGCTGTCCCTCAACCCTCTCTCATCAGTTCTGGACCCTTAGCAGGAGGCAGGCCACCTTTTATTACAAGTCCAAGCTAATGCCAAAAGTTCAGCATCTCCAAGAGGCATGGACCAGCATGGCTCTTCCAGAGACGCCCACCTTCACAGACGTCTACACGACATTCACAACCCATGTGTGTAGCTGTACTtttgctgcatcccaaatggaaattacaggagttttccaggagaaataacaagacgggagggtggcgggagacgggtctgaaatacaggacaCTCCCAGgactgttggcagATGGAGTTTTTCTTCTTGATCTCCTGCAATTTGTCTGACATGATTGCCGCTTTGACATTATGGGCTGAGGAAGGAGACGGTGACCTCGCTCGTGCCGTGTGGTCCGGCTGAAGATCAAACGCCTGGAGAACAGGGTCACGCTGGAGATTAGGTCTGCACGATAGTTAGAAAAACTAACATTGCAGTATTTTGCTGTTCTGtg

Function

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0009988 cell-cell recognition biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021857 lncRNA upstream 57548 127435 ~ 129026 (+) True XLOC_009594
TCONS_00021856 lncRNA upstream 64533 121024 ~ 122041 (+) True XLOC_009593
TCONS_00019293 lncRNA downstream 229147 420122 ~ 513158 (+) False XLOC_009598
TCONS_00021859 lncRNA downstream 241995 432970 ~ 457475 (+) False XLOC_009599
TCONS_00021669 lncRNA downstream 263886 454861 ~ 457225 (+) True XLOC_009599
TCONS_00021670 lncRNA downstream 302875 493850 ~ 512260 (+) True XLOC_009598
TCONS_00021671 lncRNA downstream 425238 616213 ~ 642909 (+) True XLOC_009600
TCONS_00019291 mRNA upstream 18424 152182 ~ 168150 (+) True XLOC_009595
TCONS_00019289 mRNA upstream 115466 68069 ~ 71108 (+) False XLOC_009592
TCONS_00019290 mRNA upstream 117004 68124 ~ 69570 (+) True XLOC_009592
TCONS_00019288 mRNA upstream 133438 39498 ~ 53136 (+) True XLOC_009591
TCONS_00019287 mRNA upstream 182329 1471 ~ 4245 (+) True XLOC_009590
TCONS_00019292 mRNA downstream 30764 221739 ~ 229482 (+) True XLOC_009597
TCONS_00019295 mRNA downstream 622805 813780 ~ 817937 (+) False XLOC_009601
TCONS_00019294 mRNA downstream 622805 813780 ~ 817937 (+) True XLOC_009601
TCONS_00019296 mRNA downstream 909584 1100559 ~ 1176503 (+) True XLOC_009603
TCONS_00019297 mRNA downstream 1008227 1199202 ~ 1211162 (+) True XLOC_009604
TCONS_00019298 other downstream 1021699 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019299 other downstream 1029471 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019306 other downstream 1549962 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019309 other downstream 2093081 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 2538398 2729373 ~ 2729489 (+) True XLOC_009620

Expression Profile

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