RNA id: TCONS_00021860


Basic Information

Item Value
RNA id TCONS_00021860
length 706
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_009602
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1032575 ~ 1035953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaatcagatgatgtcattacgctgctgtgccgtcagccaatcgttgcattgctgatcatgatttcgaggatcgatagatctgtccttcataacacacgcagcgatctcagatcagttcatccagacattctaatctgattcgcgaacttgtttgaagaaccaaattagcgagagatcagttatcaagattaaaagatccgggatctgccaaataatcttagatcatttaagcgaggtacgaagaacggacccctggtggcCATTTTTAAAGGTGTTGGGCCCGAGACGTGCTCAAGCTGTAACTAGTAAACTAATGGCATGCTTTACCTAGAGTTATTTCTGAAATACTAAAGACCTTTCCCTGCACATGGATTGGAGGGTAACCTGTTTTTGAAGCCTGTTTCCTGTGGAGTTTGGATTACCTGTTGCTCTGCTGCTGCATGATGTTTACAAACCAGAACCTCAGAGAAGAGACTGTGGGATACCCCAAACTTCTATTTACCCCCAAGCAAAGAACAAAACGGAGATTTGCTGTGATGATATCCAGATTGGGGGGGTTGCGTTAAAGAAAGCAATCCCATTCGAAATGGTCAAGGTAATTGCTCCTAACACTGAAACACTCCACTCCACAAAGGCCCACAAGGACAGACATTGTCATGCAGAAAACTAGCCTTCGGAGACAATTGATTTGGCCCATATCATGGC

Function

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0090344 negative regulation of cell aging biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021671 lncRNA upstream 389666 616213 ~ 642909 (+) True XLOC_009600
TCONS_00019293 lncRNA upstream 519417 420122 ~ 513158 (+) False XLOC_009598
TCONS_00021670 lncRNA upstream 520315 493850 ~ 512260 (+) True XLOC_009598
TCONS_00021859 lncRNA upstream 575100 432970 ~ 457475 (+) False XLOC_009599
TCONS_00021669 lncRNA upstream 575350 454861 ~ 457225 (+) True XLOC_009599
TCONS_00021861 lncRNA downstream 360270 1396223 ~ 1398918 (+) True XLOC_009610
TCONS_00021862 lncRNA downstream 684806 1720759 ~ 1721414 (+) True XLOC_009611
TCONS_00021864 lncRNA downstream 740562 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021863 lncRNA downstream 740562 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021865 lncRNA downstream 824431 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00019295 mRNA upstream 214638 813780 ~ 817937 (+) False XLOC_009601
TCONS_00019294 mRNA upstream 214638 813780 ~ 817937 (+) True XLOC_009601
TCONS_00019292 mRNA upstream 803093 221739 ~ 229482 (+) True XLOC_009597
TCONS_00019291 mRNA upstream 864425 152182 ~ 168150 (+) True XLOC_009595
TCONS_00019289 mRNA upstream 961467 68069 ~ 71108 (+) False XLOC_009592
TCONS_00019296 mRNA downstream 64606 1100559 ~ 1176503 (+) True XLOC_009603
TCONS_00019297 mRNA downstream 163249 1199202 ~ 1211162 (+) True XLOC_009604
TCONS_00019300 mRNA downstream 192120 1228073 ~ 1239617 (+) True XLOC_009607
TCONS_00019301 mRNA downstream 218437 1254390 ~ 1321591 (+) True XLOC_009608
TCONS_00019302 mRNA downstream 298478 1334431 ~ 1359116 (+) False XLOC_009609
TCONS_00019298 other downstream 176721 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019299 other downstream 184493 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019306 other downstream 704984 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019309 other downstream 1248103 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 1693420 2729373 ~ 2729489 (+) True XLOC_009620

Expression Profile

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