RNA id: TU451738


Basic Information

Item Value
RNA id TU451738
length 268
lncRNA type sense_over
GC content 0.46
exon number 2
gene id CI01000222_00200608_00202045
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 200608 ~ 202137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAACGGAGACAGAACTTGGCAGATGAGGAAGAGTTTGGTGATCAGCGCAGAAGAACCATGTGAGGAACATACATACAGCTGCACAATGAAGCACCACAATCTGGACAACAAACTGGACATTACGTTTGATGTGGCTGAATGTGACGCAGGACCTTTCGGTCGGTCTGTAATTATCAGTGTGCTGGTATCAACAATGTGTGTGGCTGTTCTCCTCATAACTGCACTCATTATATGGAGGAAGAAGAGACGTGCTGCTGGAAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451721 lncRNA upstream 7921 193458 ~ 193674 (+) True G394348
TU451659 lncRNA upstream 43416 134534 ~ 158179 (+) True G394297
TU451652 lncRNA upstream 89472 111283 ~ 112123 (+) True G394293
TU451649 lncRNA upstream 98739 54851 ~ 102856 (+) True G394292
TU451648 lncRNA upstream 101092 54851 ~ 100503 (+) False G394292
TU451739 lncRNA downstream 582 202577 ~ 202889 (+) True G394362
TU451754 lncRNA downstream 30868 232863 ~ 242720 (+) True G394376
TU451744 lncRNA downstream 39614 241609 ~ 251264 (+) True G394366
TU451772 lncRNA downstream 66949 268944 ~ 269180 (+) True G394394
TU451773 lncRNA downstream 68175 270170 ~ 270397 (+) False G394395
CI01000222_00167369_00168395.mRNA mRNA upstream 32843 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00214433_00217905.mRNA mRNA downstream 12438 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00232414_00239331.mRNA mRNA downstream 30203 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00255680_00256841.mRNA mRNA downstream 53617 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00315211_00317790.mRNA mRNA downstream 113216 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00328639_00330158.mRNA mRNA downstream 126644 328639 ~ 330374 (+) True CI01000222_00328639_00330158
TU451654 other upstream 52685 132044 ~ 148910 (+) True G394294
TU451651 other upstream 89472 109188 ~ 112123 (+) False G394293
TU451667 other upstream 158748 31433 ~ 42847 (+) True G394303
TU451875 other downstream 259994 461989 ~ 462466 (+) True G394482
TU451880 other downstream 382289 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 382289 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 548352 750347 ~ 752670 (+) True G394559

Expression Profile