RNA id: CI01000222_00315211_00317790.mRNA



Basic Information


Item Value
RNA id CI01000222_00315211_00317790.mRNA
length 767
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000222_00315211_00317790
representative False

Chromosome Information


Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 315211 ~ 318086 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCAGTGAAGCAGCCTGGTGTTTATTCGTCTGACCTGTCGTCTTCTGCTGCGGTGGAGAGACAGACCGATCTTGAGCGTCTGATTCAGGCTTTACTCAGTCACCATCAGCTGACCAATGTCCAGACGCCGCTGTCTCCTGTCCTCTGCTGTGGGTTTGACATCTCACTTGTGCAAGTCACATGTCCACAAGGCTGCTCTCCCATTGGCTGGCACCACGAGCCACGCGCAGCAGCACTATGGGTACAGACCTACAGGAATCAGGGTAAGGGTGAGAAGCCTCATGTGTGCGTGGTGTGCGGTAAAGCATTCAGTCAGAGCTCCAATCTGATCACACACAGCAGGAAGCACAGCAGCTACCAGCCATTCAGCTGTCCGCACTGCTCGCTCGGCTTCCAGAGGAGAATGGACCTACAGCGACACCTACAGACACACTCAGAGAATGACAGCTTACTGTATCACGGGACCTGAGAGAGACCGGCTGTATACAAAACACCTTGCAGGGATCATATATTTTTGTCTGCTAAAGTTCAATGTCTAATGTTGTTTTAGCCTACAAAACTTTTTCTTCTGTCTAACTGTACATGTTGTTGCACTGTGTTTAAGACCTGTTACAATTGGCTCTTCGTGGCTCTTACGATATAATTAGTTGTGGTTGACAGTTATACGTAATATGTCCATTGATCTTAATTATATACTAAATAATTCCAGTTTGGTAACATATATATATATATATAAAATTTAACACAAAAACTTCTGAATGTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU451793 lncRNA upstream 4647 310331 ~ 310564 (+) True G394413
TU451780 lncRNA upstream 16220 298757 ~ 298991 (+) True G394401
TU451779 lncRNA upstream 17088 297888 ~ 298123 (+) True G394400
TU451775 lncRNA upstream 26869 288008 ~ 288342 (+) True G394396
TU451727 lncRNA upstream 28133 283998 ~ 287078 (+) False G394352
TU451797 lncRNA downstream 3391 321477 ~ 321815 (+) True G394417
TU451736 lncRNA downstream 42819 360905 ~ 362679 (+) True G394359
TU451734 lncRNA downstream 58042 376128 ~ 382941 (+) True G394357
TU451849 lncRNA downstream 97752 415838 ~ 451797 (+) False G394459
TU451852 lncRNA downstream 108344 426430 ~ 427208 (+) True G394460
CI01000222_00255680_00256841.mRNA mRNA upstream 58365 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 75801 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 97292 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00200608_00202045.mRNA mRNA upstream 113074 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00167369_00168395.mRNA mRNA upstream 146459 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00328639_00330158.mRNA mRNA downstream 10553 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00531504_00560379.mRNA mRNA downstream 213069 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 265915 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 313142 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 376970 695056 ~ 697046 (+) False CI01000222_00695056_00696916
TU451654 other upstream 166301 132044 ~ 148910 (+) True G394294
TU451651 other upstream 203088 109188 ~ 112123 (+) False G394293
TU451667 other upstream 272364 31433 ~ 42847 (+) True G394303
TU451875 other downstream 143903 461989 ~ 462466 (+) True G394482
TU451880 other downstream 266198 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 266198 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 432261 750347 ~ 752670 (+) True G394559

Expression Profile