RNA id: TU451789


Basic Information

Item Value
RNA id TU451789
length 131
lncRNA type sense_over
GC content 0.47
exon number 1
gene id G394410
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 316938 ~ 317068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAGAGGTCGTCGACTCTCTCCACACACCTGCTCATTCACTCGGACACGCGGCCGTTCCCGTGTCCCTACTGCGGAAAGAGATTCCACCAGAAATCTGATATGAAGAAACATACGTTTATACACACTGGTGAGAAGCCTCATGTGTGCGTGGTGTGCGGTAAAGCATTCAGTCAGAGCTCCAATCTGATCACACACAGCAGGAAGCACAGCAGCTACCAGCCATTCAGCTGTCCGCACTGCTCGCTCGGCTTCCAGAGGAGAATGGACCTACAGCGACACCTACAGACACACTCAGAGAATGACAGCTTACTGTATCACGGGACCTGAGAGAGACCGGCTGTATACAAAACACCTTGCAGGGATCATATATTTTTGTCTGCTAAAGTTCAATGTCTAATGTTGTTTTAGCCTACAAAACTTTTTCTTCTGTCTAACTGTACATGTTGTTGCACTGTGTTTAAGACCTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451793 lncRNA upstream 6374 310331 ~ 310564 (+) True G394413
TU451780 lncRNA upstream 17947 298757 ~ 298991 (+) True G394401
TU451779 lncRNA upstream 18815 297888 ~ 298123 (+) True G394400
TU451775 lncRNA upstream 28596 288008 ~ 288342 (+) True G394396
TU451727 lncRNA upstream 29860 283998 ~ 287078 (+) False G394352
TU451797 lncRNA downstream 3545 321477 ~ 321815 (+) True G394417
TU451736 lncRNA downstream 42973 360905 ~ 362679 (+) True G394359
TU451734 lncRNA downstream 58196 376128 ~ 382941 (+) True G394357
TU451849 lncRNA downstream 97906 415838 ~ 451797 (+) False G394459
TU451852 lncRNA downstream 108498 426430 ~ 427208 (+) True G394460
CI01000222_00255680_00256841.mRNA mRNA upstream 60092 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 77528 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 99019 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00200608_00202045.mRNA mRNA upstream 114801 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00167369_00168395.mRNA mRNA upstream 148186 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00328639_00330158.mRNA mRNA downstream 10707 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00531504_00560379.mRNA mRNA downstream 213223 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 266069 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 313296 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 377124 695056 ~ 697046 (+) False CI01000222_00695056_00696916
TU451654 other upstream 168028 132044 ~ 148910 (+) True G394294
TU451651 other upstream 204815 109188 ~ 112123 (+) False G394293
TU451667 other upstream 274091 31433 ~ 42847 (+) True G394303
TU451875 other downstream 144057 461989 ~ 462466 (+) True G394482
TU451880 other downstream 266352 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 266352 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 432415 750347 ~ 752670 (+) True G394559

Expression Profile