RNA id: CI01000222_00328639_00330158.mRNA


Basic Information

Item Value
RNA id CI01000222_00328639_00330158.mRNA
length 635
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000222_00328639_00330158
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 328639 ~ 330374 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAAATCCCAGCTCCTAAAATAAAGCTTGCCACTTACATGGAAGACACAGAAGAAGTTTTCATATGGTTTGAACACAGACATGACTATGTTTTCAACCCTACCTTTCAAGTGGAAATCTGGGGGGACAAACTAGCAAACAAGTCCATCAGCCTTATTATTACATACAGGAACTTAAGTATCAGCAGGGACAGACTCGGTAGAGATGGTGTTTACTATACACGTGTTAGAGCAAAACCTATGGATTTCTTTGAAGGCGACTGGAGTGAGTGGAGCTCAATTGCCAGTTTCACTATAAAAACAAACAGAACTGAGCTTCTAAAGATCACGTCACGATCATCACTTCACATCACCATCGGCTTCTCCGTCTTTCTGCTGCTCATCATCATTTTGGGGGTCTTGCTATGGAGAATGCAGTGAGTGTTTTTTTTTTAAATCTCATTTTAAAATCCACAAGAAGTTTTTTTTTTTTTTTTTTTTTTTTAACAAATGTACTAATTGTTTTCTCACCCAGTATAAAAGGCTACTTCACAGCAAAACATCCTACTGCCGAAAGCAACTCTCGCACGAATCCACAGGGCGAAAGAGGTAATTCGGTTTGTCCTGTCTTATTGCTTCACTTGATGTTATGCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451797 lncRNA upstream 6824 321477 ~ 321815 (+) True G394417
TU451789 lncRNA upstream 10707 316938 ~ 317068 (+) True G394410
TU451793 lncRNA upstream 18075 310331 ~ 310564 (+) True G394413
TU451780 lncRNA upstream 29648 298757 ~ 298991 (+) True G394401
TU451779 lncRNA upstream 30516 297888 ~ 298123 (+) True G394400
TU451736 lncRNA downstream 30531 360905 ~ 362679 (+) True G394359
TU451734 lncRNA downstream 45754 376128 ~ 382941 (+) True G394357
TU451849 lncRNA downstream 85464 415838 ~ 451797 (+) False G394459
TU451852 lncRNA downstream 96056 426430 ~ 427208 (+) True G394460
TU451850 lncRNA downstream 119382 449756 ~ 451692 (+) True G394459
CI01000222_00315211_00317790.mRNA mRNA upstream 10553 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00255680_00256841.mRNA mRNA upstream 71793 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 89229 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 110720 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00200608_00202045.mRNA mRNA upstream 126502 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00531504_00560379.mRNA mRNA downstream 200781 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 253627 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 300854 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 364682 695056 ~ 697046 (+) False CI01000222_00695056_00696916
CI01000222_00772007_00787456.mRNA mRNA downstream 441488 771862 ~ 787590 (+) True CI01000222_00772007_00787456
TU451654 other upstream 179729 132044 ~ 148910 (+) True G394294
TU451651 other upstream 216516 109188 ~ 112123 (+) False G394293
TU451667 other upstream 285792 31433 ~ 42847 (+) True G394303
TU451875 other downstream 131615 461989 ~ 462466 (+) True G394482
TU451880 other downstream 253910 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 253910 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 419973 750347 ~ 752670 (+) True G394559

Expression Profile