RNA id: CI01000222_00584243_00585193.mRNA


Basic Information

Item Value
RNA id CI01000222_00584243_00585193.mRNA
length 1218
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000222_00584243_00585193
representative False

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 584001 ~ 585218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACAAAACCAGCCTTCTGAATCTGATGGAAATGGTAAAACCACTCTAGAGAAAGGGGGGAGAGACTCTGATGTCACTTCAGATTATATAGCTAAGGACCATTTAGAGAAAACTAAAAGAAAGATTGAAAAGAGATTTGGCATTGAAAAAAATCACAGTAGTTGTTGGCCAGCTGACGATATCAAACAAGCAACACAAGGAATAGATTAATATTCAAACAGAAGACGGTGCGGTGTGTAATGATGAAAAGAAATTACAGAAATTTAGTCCAGAGATATAAAGGGTTGAGTTTGAACCAATACATCTTGATCCCTTTCTTTGAAATGTCTGGTAAAATATCAGCCTCTAAAGAAGCTGATCCAAATTCAATTGTCAGGTCACCCAATAAATTAGTCAACGGATGTCCTTCAGATTCTGACTTAAGGATAAGAAAATCTTATGTCATGTCATACAACAATGAAACCAAGAACGCTGAATGGGTGTATGAGATACTGAACAAAGACACTCTGAAGGTCAATTGTAAGGCGCACGGGAGCTTTGGAAGGAATGAATTTGTGGACAAAGACTATGAACAAGGTCATCTTGCTGCGGCTGCCAATCACAGGTGGTGTCAGGAAGCCTATCATGACACTTTTTTGATCAGCAACATGGCACCACAGAATAAAGGCTTAAACAAAGGTAATTGGAAAACTATTGAGAGTTACTGTCGATACAGAGCTATGAATGATGAAGTCTGTAATGTCCATGTGTACTCTGGACCACTTTACCTAAAAGAAAAAAAAAATAAAGAGGGTACTGAGGTGGAGGATTTCTATGATCGTGCTGACCCCAGTACACTGGAGCGGAAGGGAGGGAAAGTAGCACCAACTCACTTGTTTAAGGTGATAATTGTGGAGAATGAGGATGGGACAGTAGAAGAGCTGGAATGCTATGTGATGGCCAAACTGGATAAAGAGGATACAGATATTCAAAATTTAGACAACATAGATGCTGTACAAAACAAGTATGCTCAGCATATTAACACAATAGAGAAACTCTCTGGGCTGAAATTCATAGAAAGCCATCCCGATGTGGTAACGAAGGACTGTATAAAGACGATTACAGGAGAAGGTGAAAAAGGAGAGTCATGTAGTGCTAAAATAAAAGTCAGAATAAGTGAAAAAAATGATGATACCAGGACCGGCCGTGTCTAATATCCTTGTTAACTTCGCTGTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451884 lncRNA upstream 30 573474 ~ 583971 (+) True G394486
TU451892 lncRNA upstream 97782 478461 ~ 486219 (+) True G394492
TU451870 lncRNA upstream 124525 458218 ~ 459476 (+) True G394478
TU451869 lncRNA upstream 125954 457834 ~ 458047 (+) True G394477
TU451850 lncRNA upstream 132309 449756 ~ 451692 (+) True G394459
TU451882 lncRNA downstream 6052 591270 ~ 591853 (+) True G394485
TU451929 lncRNA downstream 19022 604240 ~ 706056 (+) False G394519
TU451930 lncRNA downstream 19022 604240 ~ 612337 (+) False G394519
TU451931 lncRNA downstream 22264 607482 ~ 612337 (+) True G394519
TU451898 lncRNA downstream 57307 642525 ~ 644995 (+) True G394493
CI01000222_00531504_00560379.mRNA mRNA upstream 23287 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00328639_00330158.mRNA mRNA upstream 253627 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00315211_00317790.mRNA mRNA upstream 265915 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00255680_00256841.mRNA mRNA upstream 327155 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 344591 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00631228_00636853.mRNA mRNA downstream 46010 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 109838 695056 ~ 697046 (+) False CI01000222_00695056_00696916
CI01000222_00772007_00787456.mRNA mRNA downstream 186644 771862 ~ 787590 (+) True CI01000222_00772007_00787456
TU451875 other upstream 121535 461989 ~ 462466 (+) True G394482
TU451654 other upstream 435091 132044 ~ 148910 (+) True G394294
TU451651 other upstream 471878 109188 ~ 112123 (+) False G394293
TU451667 other upstream 541154 31433 ~ 42847 (+) True G394303
TU451975 other downstream 165129 750347 ~ 752670 (+) True G394559

Expression Profile