RNA id: TU451667


Basic Information

Item Value
RNA id TU451667
length 611
RNA type TUCP
GC content 0.47
exon number 2
gene id G394303
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 31433 ~ 42847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCTCGCTGCTGCAGTTGATACCGTGTCATGATTTTTGTGTTCATCCACCAAACACAGCATACAGATACAACGCTGGTCAGTACGGCAGTAAATTTCCAGCATTTTACCATGTCGAGTGCAGATCATCTCCTGCAGTCGTCCAGTGGCGTCCCTCAGATTGTGTCTTTTACTTCTGAAGAGATTTTCATGCTGTTCAAGGTGATTTTGACAGTAAGAGCTTCGACACTCCAGACACGACTTCACTGCTTTCTGTTTTATTCCAGTGCAGGAGTCACACTGAACATCTCCAGATTCAGTGTGATCAACTGCAGGAGCAGCAGGAGCAGCAGGAGCAGATTGGAGTCTCGTCTTCTTCAGTTTCTCCACCATCTCAGCAATCACCACATTCCTACCTAAAACTGGTCTTGGTGTGAAGGTCTGTTTGCATAATGGACATCTGTTGATTCCCTTCTGATCCTCCTGATCCCAGAAGTCAGTGATGCAGCTCATACAGTAACTGTGTCCGCAGGGAATCGTCACTGGATCCTTCAGGAGATCCAGACACACTGGACAGCAGAACTGATCCTGATCCACTGAAATGCTGGCTTCTGCCATTTCACTGCATGAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451678 lncRNA upstream 12406 18544 ~ 19027 (+) True G394314
TU451676 lncRNA upstream 16901 13153 ~ 14532 (+) True G394312
TU451648 lncRNA downstream 12004 54851 ~ 100503 (+) False G394292
TU451649 lncRNA downstream 12004 54851 ~ 102856 (+) True G394292
TU451663 lncRNA downstream 16764 59611 ~ 93211 (+) True G394299
TU451652 lncRNA downstream 68436 111283 ~ 112123 (+) True G394293
TU451659 lncRNA downstream 91687 134534 ~ 158179 (+) True G394297
CI01000222_00167369_00168395.mRNA mRNA downstream 123350 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00200608_00202045.mRNA mRNA downstream 157761 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00214433_00217905.mRNA mRNA downstream 171586 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00232414_00239331.mRNA mRNA downstream 189351 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00255680_00256841.mRNA mRNA downstream 212765 255612 ~ 256846 (+) True CI01000222_00255680_00256841
TU451651 other downstream 66341 109188 ~ 112123 (+) False G394293
TU451654 other downstream 89197 132044 ~ 148910 (+) True G394294
TU451875 other downstream 419142 461989 ~ 462466 (+) True G394482
TU451880 other downstream 541437 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 541437 696707 ~ 696859 (+) True CI01000222_00695056_00696916

Expression Profile