Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019302 |
| length | 1363 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 12 |
| gene id | XLOC_009609 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 1334431 ~ 1359903 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006376 | mRNA splice site selection | biological_process |
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110408-50 | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3). |
| ensembl_id | ENSDART00000024206 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021860 | lncRNA | upstream | 298478 | 1032575 ~ 1035953 (+) | True | XLOC_009602 |
| TCONS_00021671 | lncRNA | upstream | 691522 | 616213 ~ 642909 (+) | True | XLOC_009600 |
| TCONS_00021670 | lncRNA | upstream | 822171 | 493850 ~ 512260 (+) | True | XLOC_009598 |
| TCONS_00021859 | lncRNA | upstream | 876956 | 432970 ~ 457475 (+) | False | XLOC_009599 |
| TCONS_00021861 | lncRNA | downstream | 37107 | 1396223 ~ 1398918 (+) | True | XLOC_009610 |
| TCONS_00021862 | lncRNA | downstream | 361643 | 1720759 ~ 1721414 (+) | True | XLOC_009611 |
| TCONS_00021864 | lncRNA | downstream | 417399 | 1776515 ~ 1817548 (+) | False | XLOC_009613 |
| TCONS_00021863 | lncRNA | downstream | 417399 | 1776515 ~ 1817548 (+) | False | XLOC_009613 |
| TCONS_00021865 | lncRNA | downstream | 501268 | 1860384 ~ 1861160 (+) | True | XLOC_009614 |
| TCONS_00019301 | mRNA | upstream | 12840 | 1254390 ~ 1321591 (+) | True | XLOC_009608 |
| TCONS_00019300 | mRNA | upstream | 94814 | 1228073 ~ 1239617 (+) | True | XLOC_009607 |
| TCONS_00019297 | mRNA | upstream | 123269 | 1199202 ~ 1211162 (+) | True | XLOC_009604 |
| TCONS_00019296 | mRNA | upstream | 157928 | 1100559 ~ 1176503 (+) | True | XLOC_009603 |
| TCONS_00019295 | mRNA | upstream | 516494 | 813780 ~ 817937 (+) | False | XLOC_009601 |
| TCONS_00019304 | mRNA | downstream | 3134 | 1362250 ~ 1397106 (+) | False | XLOC_009610 |
| TCONS_00019305 | mRNA | downstream | 24798 | 1383914 ~ 1399328 (+) | False | XLOC_009610 |
| TCONS_00019307 | mRNA | downstream | 443191 | 1802307 ~ 2105556 (+) | False | XLOC_009613 |
| TCONS_00019308 | mRNA | downstream | 444346 | 1803462 ~ 2105556 (+) | True | XLOC_009613 |
| TCONS_00019310 | mRNA | downstream | 1074580 | 2433696 ~ 2434462 (+) | True | XLOC_009617 |
| TCONS_00019299 | other | upstream | 113869 | 1220446 ~ 1220562 (+) | True | XLOC_009606 |
| TCONS_00019298 | other | upstream | 121643 | 1212674 ~ 1212788 (+) | True | XLOC_009605 |
| TCONS_00019306 | other | downstream | 381821 | 1740937 ~ 1741058 (+) | True | XLOC_009612 |
| TCONS_00019309 | other | downstream | 924940 | 2284056 ~ 2284174 (+) | True | XLOC_009616 |
| TCONS_00019314 | other | downstream | 1370257 | 2729373 ~ 2729489 (+) | True | XLOC_009620 |
| TCONS_00019326 | other | downstream | 1994385 | 3353501 ~ 3353617 (+) | True | XLOC_009631 |
| TCONS_00019348 | other | downstream | 3338697 | 4697813 ~ 4707300 (+) | False | XLOC_009649 |
