Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU451652 |
| length | 671 |
| lncRNA type | antisense_over |
| GC content | 0.50 |
| exon number | 3 |
| gene id | G394293 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000222 |
| NCBI id | null |
| chromosome length | 845821 |
| location | 109188 ~ 112123 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU451649 | lncRNA | upstream | 8427 | 54851 ~ 102856 (+) | True | G394292 |
| TU451648 | lncRNA | upstream | 10780 | 54851 ~ 100503 (+) | False | G394292 |
| TU451663 | lncRNA | upstream | 18072 | 59611 ~ 93211 (+) | True | G394299 |
| TU451684 | lncRNA | upstream | 73124 | 37488 ~ 38159 (+) | False | G394320 |
| TU451685 | lncRNA | upstream | 73280 | 37488 ~ 38003 (+) | True | G394320 |
| TU451659 | lncRNA | downstream | 22411 | 134534 ~ 158179 (+) | True | G394297 |
| TU451721 | lncRNA | downstream | 81335 | 193458 ~ 193674 (+) | True | G394348 |
| TU451738 | lncRNA | downstream | 89472 | 201595 ~ 201995 (+) | True | CI01000222_00200608_00202045 |
| TU451739 | lncRNA | downstream | 90454 | 202577 ~ 202889 (+) | True | G394362 |
| TU451754 | lncRNA | downstream | 120740 | 232863 ~ 242720 (+) | True | G394376 |
| CI01000222_00167369_00168395.mRNA | mRNA | downstream | 54074 | 166197 ~ 168752 (+) | True | CI01000222_00167369_00168395 |
| CI01000222_00200608_00202045.mRNA | mRNA | downstream | 88485 | 200608 ~ 202137 (+) | False | CI01000222_00200608_00202045 |
| CI01000222_00214433_00217905.mRNA | mRNA | downstream | 102310 | 214433 ~ 217919 (+) | True | CI01000222_00214433_00217905 |
| CI01000222_00232414_00239331.mRNA | mRNA | downstream | 120075 | 232198 ~ 239410 (+) | True | CI01000222_00232414_00239331 |
| CI01000222_00255680_00256841.mRNA | mRNA | downstream | 143489 | 255612 ~ 256846 (+) | True | CI01000222_00255680_00256841 |
| TU451667 | other | upstream | 68436 | 31433 ~ 42847 (+) | True | G394303 |
| TU451654 | other | downstream | 19921 | 132044 ~ 148910 (+) | True | G394294 |
| TU451875 | other | downstream | 349866 | 461989 ~ 462466 (+) | True | G394482 |
| TU451880 | other | downstream | 472161 | 696788 ~ 696859 (+) | True | CI01000222_00695056_00696916 |
| TU451881 | other | downstream | 472161 | 696707 ~ 696859 (+) | True | CI01000222_00695056_00696916 |
| TU451975 | other | downstream | 638224 | 750347 ~ 752670 (+) | True | G394559 |
