RNA id: TU451654


Basic Information

Item Value
RNA id TU451654
length 1058
RNA type TUCP
GC content 0.47
exon number 2
gene id G394294
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 132044 ~ 148910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTATATTCAAGGATGTTGAACCTCTTAACATTTCTTAAAAACAAACCTCTGACCCAAAAAAAAAAAAAAAAAAAAAAACACTGAACAAGCTCCTCTTTTACCTTGGGAAAAACAATCGAACTGGTGTGACTGTGGAATTGTGGAAAATTATCCCCTAGTTTCACAGACAAGGCTTAAGCTAGTCCAGACTAAAATGCATGTTAGAGCTGTTTTTATTTCACCCTAGTGAAGTCCACTATATGGGGAAAAATCCTGGAATGTTTTCCTCAAAAACCCTAATTTCTTTTCAACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGACATTTTAATTCTGAAGTGAACTAATCCTTTAATGTTACTGGAACAACGTTTGTTCATAACTTTGAGAGAGCCTTGCCAGAATGTTCCCCGTTATTTTGATTCAATCTTTGCACCTGTAGTGGTCGTTTATAACAGTGTTTGCGCAGACTCACGTATATGAGGCCGGAGTAGTATCGCTCCTTCAGGTTGTGCAGCACGGACGCCTCGTTCAGGCAGGTGAGCTCGGCCATGTCCTCCACCTTACTGAACTTGGGCGGGTTCATCTTCTGGATGTCATCCTTGTTGACTCGCACTTTCTTTCCCGAGTCGGCCAGCTCCACCACGACCTCATCACCGTGCTCCTCCTTCACAGAGCCCGGCTCGAACCCCAGGCGCTCCGACGGCACCCATACCAGCTTCTTGGTGGCCCAGTCGGCCTGCGCCAGCGGGTTGTTGACCAGGTTACGGTCCACGTACAGGAACTTGTCGGCGTCCGACATGGTTTCTGTAATCAGATGCAGACGCTCGGAGTTCAGGGGGGATGGTTCTCAAAAACTCCAGGGACTCAGTGTGGATCCGTGTCGCTGCGCTCCAAACTTCAATTTTCAATCCGCAGCAACTGCGCACAAGTTCGCTCCGTTCTCTCTTTTCTCTTTTTTTTCTCCTTTCTTTCTCTTCCCTCCCTCTTCCACTCGGTTAGTTGAACTCCGTCCTGCTGCAATGGTTCGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451652 lncRNA upstream 19921 111283 ~ 112123 (+) True G394293
TU451649 lncRNA upstream 29188 54851 ~ 102856 (+) True G394292
TU451648 lncRNA upstream 31541 54851 ~ 100503 (+) False G394292
TU451663 lncRNA upstream 38833 59611 ~ 93211 (+) True G394299
TU451684 lncRNA upstream 93885 37488 ~ 38159 (+) False G394320
TU451721 lncRNA downstream 44548 193458 ~ 193674 (+) True G394348
TU451738 lncRNA downstream 52685 201595 ~ 201995 (+) True CI01000222_00200608_00202045
TU451739 lncRNA downstream 53667 202577 ~ 202889 (+) True G394362
TU451754 lncRNA downstream 83953 232863 ~ 242720 (+) True G394376
TU451744 lncRNA downstream 92699 241609 ~ 251264 (+) True G394366
CI01000222_00167369_00168395.mRNA mRNA downstream 17287 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00200608_00202045.mRNA mRNA downstream 51698 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00214433_00217905.mRNA mRNA downstream 65523 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00232414_00239331.mRNA mRNA downstream 83288 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00255680_00256841.mRNA mRNA downstream 106702 255612 ~ 256846 (+) True CI01000222_00255680_00256841
TU451651 other upstream 19921 109188 ~ 112123 (+) False G394293
TU451667 other upstream 89197 31433 ~ 42847 (+) True G394303
TU451875 other downstream 313079 461989 ~ 462466 (+) True G394482
TU451880 other downstream 435374 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 435374 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 601437 750347 ~ 752670 (+) True G394559

Expression Profile