RNA id: TU451754



Basic Information


Item Value
RNA id TU451754
length 1118
lncRNA type read_through
GC content 0.37
exon number 2
gene id G394376
representative True

Chromosome Information


Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 232863 ~ 242720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTGACGGTCTTGCCTGGGTGGTCTTACTGCTGAGCTGCACAATGGAGAACACGTAGAAATAAGGAAACTGCACGGAGAATTAAAATCACTTCCACAGCATGTCTCATTATCTCTGCTGTTTATTTAAAACAGTTCTTTCTTTTTTTTAGTCTTTTCAAATCAATTAGATCTTTATGCGTTGTGATCGTATAGTGTTAACAATTTTTCAATTTGACAACTTCAATAGATATTTCAATGAATTGATCACAAATAAATGAAAAACTGAACATTTCAATTCAATTAAGTTCAATTCAAAGGGTAAACATCCCCACCTAGCGGTGAACATATACAATTCCATTTGAACAATTAATTAATACATTAAACATGAAAACAACACATCTTACAACATACCTGCACAATGGAGAACACGTAGAAATAAGGAAACTGCACGGAGAATTAAAATCACTTCTACATAAAACAAAGACAATGCACAAATTAATTACGACTAGTCCTCGTAATACAAACTAAAAATAACTCAACATAAAACACCTCATTCGACGCCAAACACATATCAACAGTTCTACAAGAAGTTCATTGCAGGATAAATCAGCAATAAAGCAGTTAGTTATGTGTTTTTAATCATTTTAACTTATAATTCTCCGGCTGCTGAAAATGTGCGACTTACCCACAGCATGTCTCATTATCTCTGCTGTGGGCGGTCCCTATTTCACGTGCTATATGCCATCACGCAGCAGACAGATGGCGCTGTCCCCATTTATGCATCAATTTAACACTTTTACACACCGTTACACACAGCACACAAAAACACAAGCGGGTTATAACTGGTGTGTCATAGATCAAAACGTGAAAATATTTAGAGGCTTTGTTAACCACAGACCTTATTTCAGGCGATTTAGCAAAAACTCATTCAAAAACATACCCATAGACTTCAGGGCGATGGAACCGGAAGTCCTCAAATGCTAACTCGCTTCCGGGTTTTGCCTACAAAAACACGTCATCCCTGAGGTACTCTATACTGAGAAAGACCTGGCTGCAACATATTACTCCCAGATCTTGGCTCATTTGAGCGGGACAAGACCAAGTTGGGTGTTTATTGTTCACTTGACTCACTTTTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU451739 lncRNA upstream 29974 202577 ~ 202889 (+) True G394362
TU451738 lncRNA upstream 30868 201595 ~ 201995 (+) True CI01000222_00200608_00202045
TU451721 lncRNA upstream 39189 193458 ~ 193674 (+) True G394348
TU451659 lncRNA upstream 74684 134534 ~ 158179 (+) True G394297
TU451652 lncRNA upstream 120740 111283 ~ 112123 (+) True G394293
TU451772 lncRNA downstream 26224 268944 ~ 269180 (+) True G394394
TU451773 lncRNA downstream 27450 270170 ~ 270397 (+) False G394395
TU451774 lncRNA downstream 27450 270170 ~ 270521 (+) True G394395
TU451727 lncRNA downstream 41278 283998 ~ 287078 (+) False G394352
TU451728 lncRNA downstream 43125 285845 ~ 287078 (+) True G394352
CI01000222_00214433_00217905.mRNA mRNA upstream 14944 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00200608_00202045.mRNA mRNA upstream 30726 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00167369_00168395.mRNA mRNA upstream 64111 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00255680_00256841.mRNA mRNA downstream 12892 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00315211_00317790.mRNA mRNA downstream 72491 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00328639_00330158.mRNA mRNA downstream 85919 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00531504_00560379.mRNA mRNA downstream 288435 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 341281 584001 ~ 585218 (+) False CI01000222_00584243_00585193
TU451654 other upstream 83953 132044 ~ 148910 (+) True G394294
TU451651 other upstream 120740 109188 ~ 112123 (+) False G394293
TU451667 other upstream 190016 31433 ~ 42847 (+) True G394303
TU451875 other downstream 219269 461989 ~ 462466 (+) True G394482
TU451880 other downstream 341564 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 341564 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 507627 750347 ~ 752670 (+) True G394559

Expression Profile