RNA id: TCONS_00019304


Basic Information

Item Value
RNA id TCONS_00019304
length 3762
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_009610
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1362250 ~ 1399328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTTACCGACGCTCGTTCATCACCGGATCCAAGCGGAAGAAATACTCAGACAATCAGGAAATACCATTCAAACTCTCCGCAGCGGCTTCTCTCCCTGTCACACCGATTTTACCGCCTAGAAAACTTTTTGCGATCTTAGGGGAGAGATGAGGGTGGTACACAGCCTGACCGAACCGTAGATCCACTAACGGAGCGTTTAAAACAGCGAAGAACAGCCTCAGGATACCATTATTACCACCATAATCATCAAAATCACCATCACGGTCCGGTTCGCGTTGACCGACTCCACCACACACTGAAATGCTGGCGGGTCTGAGCGAGCTGTTCTGGCAGGAGCGTCTCTGGTTCCCCGAGGGTCTGGGATGGGCTGATCTGGAGGACCGGGACGGACGGGTCTACGCTAAAGCTCGCGACCTGTGGGTGGCGCTGCCCATCGctgtgctgtttctgctcataCGACAGCTCTTCGAGAAATATGTTGCTACACCGCTGGCCTCTCTGCTGGGCCTGAAGGAAACGGTGAGACGGAGAGTTGCACACAATCCAGCACTGGAGTCCTACTATTGCAACACAAGCAAAAACCCCACACAGAGTTCAGTGGAGAAGCTGAGCAAGCAGACGGGATGGACAGAGCGGCAGGTCCAGCGCTGGTTCAGACGCCGCAGAAATCAAGACAGACCAAACCTGCTGAAGAAGTTCTGCGAGGCCAGCTGGAGATTCGCCTTTTATCTTCTGGCCTTCATCGGTGGTCTTGCTGCATTAATAGATAAACCCTGGTTATATGATTTAGAAGAGATGTGGAAAGGGTTTCCCACTCTGACACTCCTGCCGTCTCAGTACTGGTACTACATGCTGGAACTGGCCTTTTACACCTCTCTCCTGTTCAGTGTGGCGTCGGACGTCAAGCGCAAGGACTTTAAAGAGCAGATCATCCATCATGTTGCCACCATCCTGCTCATCAGCTTCTCCTGGTGTGTGAACTACATCCGAGCAGGAACGCTCATCATGTTCATGCACGACTCAGCCGACTATCTGCTGGAGtCAGCTAAGATGTTTAACTACGCCCGATGGAAGAACGCATGCAACTACATCTTCATCCTGTTTGCTGCCATCTTCATCGTCACACGCCTCATCATCTTCCCTTTCCGGATCATGTACTGTACGTGGGTGTATCCCGTGACGCTCTACCCTCCGTTCTTCGGATATTACTTCTTTAACGGTCTGCTGATGGTTCTGCTGTGTCTGCACATGTTCTGGGCTGCGCTGATCATACGCCTGGCCTTCCGCTTCCTCAGCAGCAATTCATCAGTAGAAGACGAGCGATCTGATCGAGATGAGACGGACGAGTCTGAGGAGGAAGAAGAGTTGAAAAATGGAGAGATAAAGAAGAAGAACGGAGCAGCTCAGAACGGCCACGCCACATACAACAACAACCACTCGAAAACAGAGTGACGTCCTGAGAAAAACACACTCACAGTCACTGAGATCCGTCATCTCCTGAGGCAGAGCACTGAGAGCTGAGCACAGTTCATGAGCAGAGAAGGTGCTGtgtacactacacacacacacttacatacaaaCATGCctacacacatatatgcatacatacatacacacatacatacatatatacatacatactcacacacacacacacacacacacacacacacacacacacacagactctcctctgtctgctggagaaACACGGCCTCTACTGACGTCCACTCTCAGGAGCAGATCACCTGAAATCAGCAGCAGCATCAACACACCGGTGACGCCACTACAGGGATTTACAGATGAATGAAACCACTCCAGCCCACAGAACAAACTAGCGCTGTTGCCGAAAACCAGCTCTGCATCCATTCTGAGCTTTACAAAATCAGTCGCTGTTCTCTCTTGAAACCACTCGGAGGGTGTTTTTAACAGTAgttggtgctctagactagtgtttaacagcagacaacgctctaggctagttttaacagcagacggcgctctaggctagttttaaacagcaaatggtgctttaggctagttttaacgGCAGTcaccgctctaggctagtttttaacagcagatgtcactCTAGGCTAACTTTTagcagcagatgttgctctaggctagcttttagcAGAGGAccgtgctctaagctagtttttaacagcagatgtcgctctaggctagttttaaaccgcagatgacgctctaggctagttttaaactgcagatgacgctctaggctagttttaaaccgcagatgtcgctctagactagttttaaactgcagatgacgctctaggctagttttcgaAAAAGGACGGCACTCTAGgctgttttttaacagcagatgtcgcgcTAGACTAGTTTTAAAAGCAGCTgtcgctctaggctggtttttaacagcagaaggcaCTTTAGGCTAGACTAGTGTTTAAGAGCCGAAGGCGCTTTATGCCAgtagatgtcgctctaggctagtttttaacagcggacggtgctctaggctaggttttaaacggcagacagcgctctaggctagattttaaacggcagacggtgctctaggctagtttttaaacagcatacatcactctaggctaggttttaaacagcagacagtgctctaggctagtttttaaacagcatacatcactctaggctaggttttaaacagcagacagtgctctaggctagtttttaaacagcatacatcactctaggctaggttttaaacagcagatggcactttatgtagttttgaacagcagatagtgctctaggccagtagatggtgttctaggctagtgtttaagagcagagggtgctctaggccagtagatggtgttctaggctagtgtttaagagcagagggtgctctaggctagtgtataAAAGGTTGAcagtgttaaaaactagcctagagtgccatctactgttaaaaaataaGCTCAATTCGATTTAAGAGAGTCTcagtgcattttgaaaatctcagaaCTGATGCAGGATTGATTTCTCAGACATTTTTTCACCACAGCTCTAGAAAAAACTCGGCTACCAAAGATTGGGATGTTTTTAACTTTCCTGTGAAGCTCAAAACAtccatattaatattctaaaaacgtgttgttgttgttgttgttggttagGGAAACAGTATGGACATTTCACTGCTGAATATTCTGAACAAACACATTTCTCAAACTCTTAGTAGATATCTAGATTATCTACATTATTATACGGTTAAACAAAACACTTCCAACTGAGACCAGATAACTGTAAATGAGCATTGCTGGAAGAACGGTCGTTCATAACATTGAGAGAACATTGCCAGAATGTTCAGAGAATGTTTCCGGTTTGCTAGACTCTCACACAAAGCTGTTGCATAACTTGGCATGAAGCACCATTCGTCTATGGTCCATTTTTGTGCTTTCTGGAGCTCAAACAAGCCTCTTTTGCATCTAATACAGAACTTtccagagtaaatgatgactgaatacTTATTTCAGGTGACCTGTGCCTTTAAACAGTGCCTTTCTTCACTATTATTTACACAATATGTGCCttgtttatttggttttgttttaattgtgattATTTTAGAAACCATAGTCTCTTTTCAGAGCAGGACTATGAATTTGGGTTTTGTCAGTCAGAACCGAAGTACATTCGAATACCAAGTGGACCAGCGTATCTTGAAATACCAGGGTACAATCAcagtaaaatgctaaataaataaacagtcggGAAGTAAAAA

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0106097 cellular response to ceramide biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0050291 sphingosine N-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-40 Predicted to enable sphingosine N-acyltransferase activity. Acts upstream of or within cellular response to ceramide. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including lens placode; mesoderm; otic vesicle; pleuroperitoneal region; and solid lens vesicle. Orthologous to human CERS2 (ceramide synthase 2).

Ensembl:

ensembl_id ENSDART00000149299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021860 lncRNA upstream 326297 1032575 ~ 1035953 (+) True XLOC_009602
TCONS_00021671 lncRNA upstream 719341 616213 ~ 642909 (+) True XLOC_009600
TCONS_00021670 lncRNA upstream 849990 493850 ~ 512260 (+) True XLOC_009598
TCONS_00021859 lncRNA upstream 904775 432970 ~ 457475 (+) False XLOC_009599
TCONS_00021862 lncRNA downstream 323653 1720759 ~ 1721414 (+) True XLOC_009611
TCONS_00021864 lncRNA downstream 379409 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021863 lncRNA downstream 379409 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021865 lncRNA downstream 463278 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021866 lncRNA downstream 724565 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00019303 mRNA upstream 2347 1353894 ~ 1359903 (+) True XLOC_009609
TCONS_00019302 mRNA upstream 3134 1334431 ~ 1359116 (+) False XLOC_009609
TCONS_00019301 mRNA upstream 40659 1254390 ~ 1321591 (+) True XLOC_009608
TCONS_00019300 mRNA upstream 122633 1228073 ~ 1239617 (+) True XLOC_009607
TCONS_00019297 mRNA upstream 151088 1199202 ~ 1211162 (+) True XLOC_009604
TCONS_00019307 mRNA downstream 405201 1802307 ~ 2105556 (+) False XLOC_009613
TCONS_00019308 mRNA downstream 406356 1803462 ~ 2105556 (+) True XLOC_009613
TCONS_00019310 mRNA downstream 1036590 2433696 ~ 2434462 (+) True XLOC_009617
TCONS_00019311 mRNA downstream 1072783 2469889 ~ 2472577 (+) True XLOC_009618
TCONS_00019313 mRNA downstream 1168327 2565433 ~ 2583278 (+) False XLOC_009619
TCONS_00019299 other upstream 141688 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 149462 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019306 other downstream 343831 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019309 other downstream 886950 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 1332267 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019326 other downstream 1956395 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 3300707 4697813 ~ 4707300 (+) False XLOC_009649

Expression Profile

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