RNA id: TU451793


Basic Information

Item Value
RNA id TU451793
length 234
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G394413
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 310331 ~ 310564 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAGTCTCAAACTGTGGTCAGATTCGGCGACTCTGTAACCAAAAGTCAATTTCAAATCTGATCTTGATCTGAGCTGCTTTTCACATTCATTTTATAGCTGCACTGTAAAAAATATATTTTCCTGATTTATCACAGCATTTTTGTTGTTGTTGTTGTTGCTTAGATAATTTATGTGGTTCAGATAACATACACTAAAAAATACTGGGTTTAAAACAACCATATTTGGGTTGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451780 lncRNA upstream 11340 298757 ~ 298991 (+) True G394401
TU451779 lncRNA upstream 12208 297888 ~ 298123 (+) True G394400
TU451775 lncRNA upstream 21989 288008 ~ 288342 (+) True G394396
TU451727 lncRNA upstream 23253 283998 ~ 287078 (+) False G394352
TU451728 lncRNA upstream 23253 285845 ~ 287078 (+) True G394352
TU451789 lncRNA downstream 6374 316938 ~ 317068 (+) True G394410
TU451797 lncRNA downstream 10913 321477 ~ 321815 (+) True G394417
TU451736 lncRNA downstream 50341 360905 ~ 362679 (+) True G394359
TU451734 lncRNA downstream 65564 376128 ~ 382941 (+) True G394357
TU451849 lncRNA downstream 105274 415838 ~ 451797 (+) False G394459
CI01000222_00255680_00256841.mRNA mRNA upstream 53485 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 70921 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 92412 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00200608_00202045.mRNA mRNA upstream 108194 200608 ~ 202137 (+) False CI01000222_00200608_00202045
CI01000222_00167369_00168395.mRNA mRNA upstream 141579 166197 ~ 168752 (+) True CI01000222_00167369_00168395
CI01000222_00315211_00317790.mRNA mRNA downstream 4647 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00328639_00330158.mRNA mRNA downstream 18075 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00531504_00560379.mRNA mRNA downstream 220591 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 273437 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 320664 631228 ~ 636853 (+) True CI01000222_00631228_00636853
TU451654 other upstream 161421 132044 ~ 148910 (+) True G394294
TU451651 other upstream 198208 109188 ~ 112123 (+) False G394293
TU451667 other upstream 267484 31433 ~ 42847 (+) True G394303
TU451875 other downstream 151425 461989 ~ 462466 (+) True G394482
TU451880 other downstream 273720 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 273720 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 439783 750347 ~ 752670 (+) True G394559

Expression Profile