RNA id: TU451849



Basic Information


Item Value
RNA id TU451849
length 7237
lncRNA type read_through
GC content 0.38
exon number 2
gene id G394459
representative False

Chromosome Information


Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 415838 ~ 451797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAGAATTTTCGTTTTTGGGTGAACTATCCCATTAAGTCTGCTCCTAGCTAAAACTCTGTGGTAGGAGATTTCTGTTGAGTTTTCATGTCCAGATAGGACAAAGACTTCTTGCAGTTAAAAAGCAGAATGAAAGATCTCACAGAGAAGTCCTGATACTAGTGTGTATGACTGAAATTGCATCATCATCTTTTTATGACATTTCAGTTGTGGGTGAAGGGCCATAAATCCCATCTATAGCAGTGACTCATTGGACACAGGTAGCTCAGGAACACAACCTGGAGCGATGTTAATACTAGCAAAAACATTCTCTTCAAGAAAGCCCCTCCCCCTGTTCTCTACCCATAATGCCTCTCTTCTATCCTGGGGTGACTGACTCAGTGGTAATACACGTTTTGCCCTGAGAAAGGGGCCTAGTATCTGTCCACTCTGGTCTAGTATGAGCCAAGCTCAGCACACGCCAGTGACTCAGTACTTGTCCAGGTCAAGTCTGAGTAAACTAACCTACATCCTGTGAGCCTGGCAGGAGCTTCTGATTCCCTCTGTCTACGCTCCACTGCATGTGTCTCTCCTGTTCTAAATAAAGAGCTGGAGAGCACGAGGCAGGGTGCGAATCAGCGCACAAGACACAGCGAGCACCATGTAAATCTTTAATTGTGATGAGTAAAAATAACCATGCAAATCCCATTCGGGAAAACAGTATAGATCTCACTAAAAAACAGGCTCTATACATTCCACATTTCATATAGGCAAAGTACTTGCAGGAGTGAGATGCTACAAAATTGTGTTGTCCTACATATGGAGTATCAGGTGAGAGAGCGAGTGGGTGAGCAAGAGAGAGAGAGATCCAGCAGTGAAGGTTCTGGAACAAAGAGGGCAAGTCTATAAACAGATAAACCTGACAGAGAAAACCACACATGAATTAATGCAGTGGTGTGTTGTAGCTCCTCAACCTAGTTTCACTTTACAAAAACACCTACTTAAGCACACAACCTGGATTAGTACATTAATCTATGAGCCACTTTGATTATTAGGCCTGTGTACAGTTCATAAAGAAGCTGATCAGCTTTTTAACCACATTTTCAGATATAACAGTTAAGAATGGCAAATATATTTAATATTATATATTCTATATTATTTAGTTGCCAATATAAAATAGAAGCCATCATCATAAAAATCATGATGAGCCCTAAATATTGTACCTGGATCCTTAATGCTTTTTCATCCCAACATCAAAAAGTCATACTTATTAGACCATAGTAAAGACACACAGCAAATGGGAATCAAACAGTCAGCAAGTACCAGGTAGAAAGTAAATGACTTAACGGAATATTGGGGGAAAATTGTTCCTAGTATAGGGATTTGCATTATTATTAAAAGAGTGAGAAGAATGCACTATGAGATAAGAAAGATAGAGATGATGAGAGTGAATGAGAGGTTCTATAAAAGTCCTCCTCTTAATCTCGAACATAAAACCGATATGTATAATCTACAGTGACAGGATGACTCAGTTTAGGAAGAGAGCTCACAGAGATTAGCAGAAGCATCATTCTCCTGGAACACAAGAGACAAAGAGTGAGTTAGAGAGAGTGTGGTACAGAGAAAGAGAAACAAAAACCTCTTTATAATACAATAAAAGAATACAGTGACCAGGAGCTGTCAAGCTCCAAAAAGGGCACAATAAGGCACCATAACAATAGTTCATATGACTTCTGCACTATATTGTTTGGGTCTGTTTTGGGTCTTTTATGGTACGTTAATAGCCCATTGGTTTTACTTTATTGTCCTTTAAATAAAACTTGGCTGTCTATGCAGCAGAAATATATATAAGATATATTGAAATCAGTGCTACATGACTACAGAAAACAGATAAAAAGGGCTGTGGCAAAAAAAAAAAAAATCCCAAAACTTTAACACCTACAATGCACTTTGATTTTGGCACACCCCTCTGTTGATCACACTGTCTGTGGGCAGGAATACAAAAATGGAAGTTCAAACTGTAGTTTTAACAAAAGCCCTTTTTTGCTGACAAACAGTGATATCTGGGTGCAAGTATTATCAAGAAAGCGTGCACATTGTTTGTTTACATACACTAGCGACTGTAACAATACAACGCTGGTTAAAAGTCTGCAAGCTTATCTTGTAATTTTCTGCAAAATATAGAAAGTCATATGGGTTTGGAGTAACATTAGGGCGAGTAAATAATGCCATTGATTATCATCTTTGAGTAATCTTTTTCTCTAATAGAAAAAAACAAACTAGGCCACTGTTTTCCATTTTCTCCTTACTTGAGTATAATTTGCCGTCAGATCTGTGTCAGGGTTGGGGGCAAATACAATGCACCGAAGCTTAAAAACAATCCAAGCACATTGACACACATGCATTTTCCTGAATTGCTTCAAGCTAATGGCATGCCATTCAAGCATTTTATAGATAGCACTTTAATGATTAATGAGTGACGGAGAAGCCTGGAGTCTGATTGGCTTATAAACACTGTTTAACTTGCTGTTACATTTGTGAGTGACAAAACTTCCCCTGAAGCCACAGTAGCAATGAGGAAGACAACCTCCTCCTGAGCCAGTGACTGGACAACTACGGCTAATGAGATTTTAATAAGGCACTTTGGCCTGAAGGGACTCTTTAACCTCAATAAAGAGGTTCACGTCCCTTCAGGATGAATCCTAATGCATTAGTGAAGCTGTGATTCAGCAGTGTTTGATGAAATTGCGTCTACCTGCTGGCACTCACCTGCGTGCAAATTTGCTGTGTTAGCTTAATAAAGGCCAAGTCGTTCATCTGAACAAAATTTGATTTATGTATTTTACCCCAACAGCAAAAATTGTCTGAGTCACAAATCGTAATGTGCAGTGATTTCTTGGCTTGCGGCAGCAAACATGCGTCGAATCAAAGATGCCTGTAAACACAAACTCCTACACTAACTAGACAGCACATGGACATGCAGCCATTTTGTTGTTGTTTAGTGTCCTTTACACTGTGCCCAACAGAAAAGACCATATGACTTTCTTCCGTGGAACACACAAGGTCGCTATTTGAAGAATATCTTATAATAGAATATCTTATAATGCTTCCATTATACGGCATTACGTTTAACAACATTCTTCCGTTTGTGTCCCATGAAATAAACTCATACAGATTTGAAATAACATAAAATTAAGTAAATGATCATAGAAGAGAGAAATTTTCATATTGGTGGGAACGATATATTTTTTAACGGTTTTAAAATTAGATGAAAAGAAAAAAAACGGTAACACTTTACAATAAGGTTCATTAGTTAACATTAGTTAACACATTAACTAATAATGAACTGCACTTATACAGCATTTATTAATCTTTGTTAATGTTAATTTCAACATTTACTAATACATTATTCAAATCAAGAGTTGTATTTGTTAACTTTAGTTAATGCATTGTGAACCTACATGAACTGCTGTACTAACAAAGATTAACAAATACAGTAACAAATGTATTGCTCATGGTTAGTTTAAGTTAGTTCATACATTAACTATTGTTCACAAATGAACCTTATTGTAAAGTGTTACCAAAAAAATAATCAGCAGCAGGTCAGTGTCTCACAGCTAGACTGAATAGTGAAGACAAATGTGCATGTCTAGAAAACAGCCATGTCAAACTGCAGGAGCCGGACACCAGTGAACACGCACAGCCTAGAAAAATGCAGAAATCTGACAAGCGAAGAACACGTAAGCGCTGCAGCAAACTCAGAATCACTGAAGTGTTGTAAAGCATCCATCAAGTTGGCTGTTGGGCACTCAGAGACACGCATGCTCCATTTAGAGATTAGCTGCAGTGGCTGCAATAAAACATCTCTCTGGAGTACTAAAATCTACCATGACCTAATGAACGAGAGCTAGAGGGACAAAGAGATGCAGAACGACACAAATTAATTTATGAGAAATGACTCATGGTTTAGATGGTTTAGCAACAGACGCACCCTTTACCGACATCAGTATGACATCATCATCAGGAAAGAGCTCATCCATTTAGGTTGCGCTACGACATCAATCAAAATGATTCATATTTTTGGCCAGTTCTTTCATGTCTGCACTACATTAATGCAACTAGCATGACTTGCATACGTCTGCACTGCATTTATTGACCAACGCTGTTCATTTGAGCATGACCCCTTAAAACTGCTGTTTTTTTCTTAAAGGGGACCTATTATGCCCCATTTTACAAGATGTAAAATAAGTCTCTGATGTCCCAAGAGTGTGTATGTGAAGTTTTAGCTCAAAATACCCCACAGATCATTTTTTATAGCATGTTAAAATTGCCACTTTTTGAGGTTGAGCAAAAACGTGCCGTTTCAGTGTGTGCCCTTTAAATGCAAATGAGCTGCTGCGCTTGGCCTAAGAGGGCGGAGCTTCAAGAGCTGATTCTCCGGTGCAAGGAGTCAGTCAGGATGCACTATAATGCGAATACATGCTGCATGGAGATAGAACAGGTATAGTTTAGTTCAATTAAGGTTATAACTTATATTGTCTTCTTCCATTATATTAGTACAAGCCTGTTGTACCGGACCCCGTTCAAATGATGGCCAAAACTTTACCGATGAGTTTTATGATGTTTATTGTACTTCACATAAAAGATAAAGCGTCCGTTTTCACTCTAGAAAATCTCTGTAAGAGCTTAATAAGACAAGTGCAAGTGTGCATTAAAATATTATCCATAAACTCTCTCTCTCTTTCCCTTGCATTATCATTAACATACACAGCGAAGTACACAGAAACACTCGTTACAACTAACAGTAAACAAATATATAAAGACCTTATGCCTTTTTGGGTGGTGCTTAATAAACTGGTAAACTTTATATCCGTAAATCAACTCCGATGAACGGTAATAAAGTGCTCTCACCTTCATTACTGCCGTATCCAGTATCACTCTGGATTCACTCACATTCGCGCAGACATAATTTCGGTAGAGTTGAGGGAGCATTTTCTTCAAAAACAAAATGAATCCACCTCGTCTTCAGCGGCTCAGATTTAGGGAGTAAATGGAGAGAGCTATGTGGATTAATCCATCCAGCTACAGAACATCTAAACCGCTTGGGAGACGTTCTCATCAGTGCCGTAATGGCAGACTGCGTAAACTTGCTGTGAACTCGCTCAGGGTGGTTCTATGTTAAAACGGCAGTGTCTGTCAACATTCGTGGGCGGGGCCTGTGGCTAATGTGACGTCACATTGCCAGGGATCTGGAAACGGCTTGTTCTGAGACACTACTTATGATTTATGTGGATTAAAAAAAGGAGTGGTTGGATTTTTATCATTATAAGAAACAATTACATCAAGGCAAAACCACCATCTTCCTCACCACAAAAACAATGAATCAAATTCAATTCGAATTCAATAGATCTGAATGGATCTGATATTAAACTGCCAAAAGCTGAAGATGATTATTAGTGTAGAAAAATGCATGAATGCTTCATAAATATGCTATACTGGGAGCTCATAAATAGCTTACAATAATCATAATAATCACTTGGAAATGTTCCCTCTCAGTCCTGTATTTATCTGGTCCCTCAATCTAAACCACTGATTATTGTTTCTAGATTACTAGTACTGAATCTAATTAAGAATTAAAAGAAATATCAGCCATTTCAGACAATATTATCCTACTACTGACCACAAACGCACTTGTGAACGCACAGAAAACACTCAAAGCTTCAACGCTCGAGTAATTCCCTGATGGACTGACCCGTGTTTCAATGTGCAGGGAAAAACCTCTCTAGACGCCCAAGGCTTCTCCAAACATCAGAGTGTGTGATGCTTTGAAAGGAGCAAATGCACTGGAGACAGGTACAATACACCGTCCACATTAATATTCATGACAGAATAAACCTGCAAGCTATGCTTTCTGTAAACCACGTACACACACACACACACACGGACATGCAAGAGAAATCTGAAACAAAGCACAAAAAGGGCGTCTGAATGTGGCATTATCATCCATATGATGGCGACAAAGCACAAATATCCTACTGTGCATATGAAACATAAGCATAATAATATCTATATATGCACAAAACACATTTTAAAAAATATTTTCTGACATAAAATCAGATGTGGTCCTAGCTGGCCATATGAACGGAATAAAAATGACCAGGCGAATCTCACAAAAATGTGCAGGTCATATTTCAGCCTAAAACAAAGCCTATTTTCGATGCATTATTTTCATTACACAAATAATCAACCATTTTAAACCCTGTTCAAATAAATTACAAGCTAAAAAAATGTGCAAAACTGTGGTTTATTAAAAACACAAATATTCTATTTGTTAAAAATGAATGTCACTATCTTGAAAAAAAGAATGCCCTGGTATAGTGTCATGAATGTATGCACATTTAAAATAAATGTTGCTTTGCATTTATGAAAACAAAGCCTATAAACATTTGAATCCGCATCTTAAATGTATGTGTATTTAAATTGAAAAAATAATTCCAGTATTTTTTTTTTAATACAGTAATTAGAATAAGAAAAAAAAAAACTTTTACTTTAAATGTCATGAAAATAAAACATCATAATGGTTCTAAAAAAAGGATTAATTTTTTAAAGAAAAATAGAATTTCTTATTTTTCCCTTTGATTTTAGGCTGAAATCTGCCCTGGACATGTTGTCATGAGAGTCACCAAAGCACCTGAAACTGCTGTTCTGCTTCCATTTGTGTTGGCATTAGTGCGTGTGCTGTAAATCCTCCTCGCCACTAGAGGACACCATTTACTTTAGCGGTTCTAGTGCAACATGAGCTTATCACAAAGCTAAGATGCTCATGAATATGCAAACACAGTGTGCTCATTACTTATAGCGGATTTAAATGCTGTAAAAGCGTAGTTAAAACAAGTTTATCTGTAAACAAACAAAAAAACGCAGGAGTGTATGTCCGTCCCGTGTGTGAGATAAATGAAGCGTTACCCAGAAACCCCTCCACACATACACACACACATATACACACACATACACACACACTGTCTCTCTAGCTGAAGCAGCAGAAGACTGAACATGTCGACGGCTCCGGGCTACGGAAGTTTCCGGAGGTCGGAGTGTCGGGACATTCAGCGATGAACCGGTGCAGTTCAGAGACTTGTGGCACATCCTGAGTTTGTTGCTGAAACACAAACACACACATACAGCCATTTTTGCACATTTTTATTTATTTATAAAAATGTTAAATTGTTTTAGCTAGATGTGCTATACTTAAAAAAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU451734 lncRNA upstream 32897 376128 ~ 382941 (+) True G394357
TU451736 lncRNA upstream 53159 360905 ~ 362679 (+) True G394359
TU451797 lncRNA upstream 94023 321477 ~ 321815 (+) True G394417
TU451789 lncRNA upstream 97906 316938 ~ 317068 (+) True G394410
TU451793 lncRNA upstream 105274 310331 ~ 310564 (+) True G394413
TU451869 lncRNA downstream 6037 457834 ~ 458047 (+) True G394477
TU451870 lncRNA downstream 6421 458218 ~ 459476 (+) True G394478
TU451892 lncRNA downstream 26664 478461 ~ 486219 (+) True G394492
TU451899 lncRNA downstream 28453 480250 ~ 644995 (+) False G394493
TU451884 lncRNA downstream 121677 573474 ~ 583971 (+) True G394486
CI01000222_00328639_00330158.mRNA mRNA upstream 85464 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00315211_00317790.mRNA mRNA upstream 97752 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00255680_00256841.mRNA mRNA upstream 158992 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 176428 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 197919 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00531504_00560379.mRNA mRNA downstream 79358 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 132204 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 179431 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 243259 695056 ~ 697046 (+) False CI01000222_00695056_00696916
CI01000222_00772007_00787456.mRNA mRNA downstream 320065 771862 ~ 787590 (+) True CI01000222_00772007_00787456
TU451654 other upstream 266928 132044 ~ 148910 (+) True G394294
TU451651 other upstream 303715 109188 ~ 112123 (+) False G394293
TU451667 other upstream 372991 31433 ~ 42847 (+) True G394303
TU451875 other downstream 10192 461989 ~ 462466 (+) True G394482
TU451880 other downstream 132487 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 132487 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 298550 750347 ~ 752670 (+) True G394559

Expression Profile