RNA id: TU451875


Basic Information

Item Value
RNA id TU451875
length 319
RNA type TUCP
GC content 0.46
exon number 3
gene id G394482
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 461989 ~ 462466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGAGGAGATGAACAGACACATATCAGCTCTTTCACACACAATCAAAGACATGGAGGAGATGATGAAAGACAATGACGTCTGCTTTCTGAAGGAGTTTCCAGTCTCAATGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGATGGCTTCTGGAGCTTTGATTCATGTGCCACATTACTTGGGCAACCTGCAGTTCAGAGTCTGGAAGAAGATGCAGGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451870 lncRNA upstream 2513 458218 ~ 459476 (+) True G394478
TU451869 lncRNA upstream 3942 457834 ~ 458047 (+) True G394477
TU451849 lncRNA upstream 10192 415838 ~ 451797 (+) False G394459
TU451850 lncRNA upstream 10297 449756 ~ 451692 (+) True G394459
TU451852 lncRNA upstream 34781 426430 ~ 427208 (+) True G394460
TU451892 lncRNA downstream 15995 478461 ~ 486219 (+) True G394492
TU451899 lncRNA downstream 17784 480250 ~ 644995 (+) False G394493
TU451884 lncRNA downstream 111008 573474 ~ 583971 (+) True G394486
TU451882 lncRNA downstream 128804 591270 ~ 591853 (+) True G394485
TU451929 lncRNA downstream 141774 604240 ~ 706056 (+) False G394519
CI01000222_00328639_00330158.mRNA mRNA upstream 131615 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00315211_00317790.mRNA mRNA upstream 143903 315211 ~ 318086 (+) False CI01000222_00315211_00317790
CI01000222_00255680_00256841.mRNA mRNA upstream 205143 255612 ~ 256846 (+) True CI01000222_00255680_00256841
CI01000222_00232414_00239331.mRNA mRNA upstream 222579 232198 ~ 239410 (+) True CI01000222_00232414_00239331
CI01000222_00214433_00217905.mRNA mRNA upstream 244070 214433 ~ 217919 (+) True CI01000222_00214433_00217905
CI01000222_00531504_00560379.mRNA mRNA downstream 68689 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00584243_00585193.mRNA mRNA downstream 121535 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00631228_00636853.mRNA mRNA downstream 168762 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00695056_00696916.mRNA mRNA downstream 232590 695056 ~ 697046 (+) False CI01000222_00695056_00696916
CI01000222_00772007_00787456.mRNA mRNA downstream 309396 771862 ~ 787590 (+) True CI01000222_00772007_00787456
TU451654 other upstream 313079 132044 ~ 148910 (+) True G394294
TU451651 other upstream 349866 109188 ~ 112123 (+) False G394293
TU451667 other upstream 419142 31433 ~ 42847 (+) True G394303
TU451880 other downstream 121818 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other downstream 121818 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451975 other downstream 287881 750347 ~ 752670 (+) True G394559

Expression Profile