RNA id: TCONS_00021861


Basic Information

Item Value
RNA id TCONS_00021861
length 2696
lncRNA type sense_over
GC content 0.36
exon number 1
gene id XLOC_009610
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1362250 ~ 1399328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtgctctaggctagtgtataAAAGGTTGAcagtgttaaaaactagcctagagtgccatctactgttaaaaaataaGCTCAATTCGATTTAAGAGAGTCTcagtgcattttgaaaatctcagaaCTGATGCAGGATTGATTTCTCAGACATTTTTTCACCACAGCTCTAGAAAAAACTCGGCTACCAAAGATTGGGATGTTTTTAACTTTCCTGTGAAGCTCAAAACAtccatattaatattctaaaaacgtgttgttgttgttgttgttggttagGGAAACAGTATGGACATTTCACTGCTGAATATTCTGAACAAACACATTTCTCAAACTCTTAGTAGATATCTAGATTATCTACATTATTATACGGTTAAACAAAACACTTCCAACTGAGACCAGATAACTGTAAATGAGCATTGCTGGAAGAACGGTCGTTCATAACATTGAGAGAACATTGCCAGAATGTTCAGAGAATGTTTCCGGTTTGCTAGACTCTCACACAAAGCTGTTGCATAACTTGGCATGAAGCACCATTCGTCTATGGTCCATTTTTGTGCTTTCTGGAGCTCAAACAAGCCTCTTTTGCATCTAATACAGAACTTtccagagtaaatgatgactgaatacTTATTTCAGGTGACCTGTGCCTTTAAACAGTGCCTTTCTTCACTATTATTTACACAATATGTGCCttgtttatttggttttgttttaattgtgattATTTTAGAAACCATAGTCTCTTTTCAGAGCAGGACTATGAATTTGGGTTTTGTCAGTCAGAACCGAAGTACATTCGAATACCAAGTGGACCAGCGTATCTTGAAATACCAGGGTACAATCAcagtaaaatgctaaataaataaacagtcggGAAGTAAAAACTCCACTGATTTTCTCTAACGGGGAATAGAGTTTAACAATACATAATCCAACTTTATAGACAAAGCTGTCGTGAGCTCTTCTGATGGATTGTATGTGCTGTTCTTGAAGCCACCTGATCATTCATTTAACGTATTCTTAAAACACTCTtgcagaaaaactacattacccatgatgctttgctgTCCCCCAGCTTAAATGATGCAGTCAAGTTTCCTTATGCATTCAAAATCTGTTTCGTGAACACGAGCAACAATTAAAATCAGTAGTTGTATCATCATGTTTATTCAATTGTGTCATCAGCAATGCATCATGGGATTGTAGTTTTGAAAGGGACAGTTCAATCAAAAGTGAAACTCCTCCGCTTGTTTGAAACCTAATCTTCTgttttaaaacaagcagaatttccatttttgggtgaactagccctttaactGGCAGCTTTATAATGTGTCAACAGTGTTTTTATGTTAATAtgaggtgacatggtggctcactgtcgcctctcagcaagaaggtcgctggttcgagcctcggctgggtcagttgacacaTCTGGGTGGAGTTTCTGTGTGTGGGTgctcccccacagcccaaacacacgCGCCATAGAGGAatcgatgaactaaattggccgtagtgtgtgagtttgtgttggTATGAgtgtgttttccagcactgggttgcagctagaagggcatccaatgACTTGTAAGTACTTCTGGAACCAGCGCTGCTGCAATATCCTCTCTATACCGCATCTACGACACTAAAGTCTCACTGTAAACCAAAATCACTGCCAAATATGCCCGAGTGCACCTTTAAATATGGCCAAATGTTACAGACTATTATAAACCAAAGAAAATAACATGCGTTACACTGCCACGGAGCATACGTTTACATAGAAACACAGGCTTATTCACAGGCAAACCACTACCATTACCATTATATAGAGTTTaagacaaaattatcagccctcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacatttaatataacaccaagtgctgtttaatgaagattttttacaacataatagttttaataactaatttttctgtttatttactgcattataggatgttgatGTCGGCTTTTGAggatgaaaattcaactctacggtttaacaaagtgacttttattgacgtttTCGTCGTTTAAAACTATATTCTATACAAAAAATGAGTGTATAGCTtattatacaacaccaacccacacaatgcatcactttaaactattaaaaatgtcaataaaagtcacgaTTTCAAGcttttcaacataaaaaagttGTTTATAGAATAGATCAAGCTCAAGAAAATGCATAAACACAAACAATCACTAACACACTCTTAAATACTCTTGAAATTCACCAGTCAGACACATTGGATATTGCATTTTCTCACAGAGTCTGAATATTCACAAGCCAAAGAGAATGAATGTTTTCTTGATGCAGCTTCTCATGTCCTCCATAATCCGGCCAGTACTCTCTACGTCTACAGCATGTACGGTCATGGACAACACCTCTGCTTTATCTGAAGCATCGGCTTTATTATTCCCCGTCTCTGATTTCATCATTCCTCCCATCATCCTGTCTgtgcattattattgttattatatttcagAAGGAGCGAGTCAGATTACCACAGTGTTacctttgttttgtattttcctGTGTTTTGTAATATGATGATGTTATTAAAGAGAATGTTAACAATAAAATGCTGAATTGGAGTCACCTGA

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0106097 cellular response to ceramide biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0050291 sphingosine N-acyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021860 lncRNA upstream 360270 1032575 ~ 1035953 (+) True XLOC_009602
TCONS_00021671 lncRNA upstream 753314 616213 ~ 642909 (+) True XLOC_009600
TCONS_00019293 lncRNA upstream 883065 420122 ~ 513158 (+) False XLOC_009598
TCONS_00021862 lncRNA downstream 321841 1720759 ~ 1721414 (+) True XLOC_009611
TCONS_00021864 lncRNA downstream 377597 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021863 lncRNA downstream 377597 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021865 lncRNA downstream 461466 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021866 lncRNA downstream 722753 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00019303 mRNA upstream 36320 1353894 ~ 1359903 (+) True XLOC_009609
TCONS_00019302 mRNA upstream 37107 1334431 ~ 1359116 (+) False XLOC_009609
TCONS_00019301 mRNA upstream 74632 1254390 ~ 1321591 (+) True XLOC_009608
TCONS_00019300 mRNA upstream 156606 1228073 ~ 1239617 (+) True XLOC_009607
TCONS_00019297 mRNA upstream 185061 1199202 ~ 1211162 (+) True XLOC_009604
TCONS_00019307 mRNA downstream 403389 1802307 ~ 2105556 (+) False XLOC_009613
TCONS_00019308 mRNA downstream 404544 1803462 ~ 2105556 (+) True XLOC_009613
TCONS_00019310 mRNA downstream 1034778 2433696 ~ 2434462 (+) True XLOC_009617
TCONS_00019311 mRNA downstream 1070971 2469889 ~ 2472577 (+) True XLOC_009618
TCONS_00019313 mRNA downstream 1166515 2565433 ~ 2583278 (+) False XLOC_009619
TCONS_00019299 other upstream 175661 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 183435 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019306 other downstream 342019 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019309 other downstream 885138 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 1330455 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019326 other downstream 1954583 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 3298895 4697813 ~ 4707300 (+) False XLOC_009649

Expression Profile

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