RNA id: TU451975


Basic Information

Item Value
RNA id TU451975
length 1432
RNA type TUCP
GC content 0.40
exon number 3
gene id G394559
representative True

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 750347 ~ 752670 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGTGTCTAATGGTTTTCTATGAGTGGAAAGGGAGGCATGACTCCTGCTGTAACTTTACCAGTGGTGGACAGTAATGAAGTAAATGTAATTCGTTACAGTACTAGCTTTTTCGAGTATCTGTACTTTATTTAAGTATTTCCATTTGGGGATACTTTTTACTTTAACTTTACTACATTTCAAAGTCAAATATCTTACTTTTTACTCAGCTACATTTTGCGAAATCAGTCGTTCCTTTTTATTTATGAGTGGATAAAAAAACTGAACAGGTCAAGCACGCGGCAGGCAAGCCACCAATCAGGGTACAGCGCGCGCTCTGTTTTGAACTTGGTTTGGTTACTGCTTACTTCACTGCGTCAGTGCAACGGCATAACATTTTGAGAGTGTCTTCACTCTTAATAAATGATGGAAGAATCAGGAACTCCTGACTCTAAAGTGCCAGTGCCACAACAGCCGTGGCCTTATTTGCGGGATTTTTTTGAAGTCCTTGAAAAGAAGAAAGAGTCCTTAATTTTCAACTGCCTTATTTGCCTGCCTCGGAACTCAAACATTTCTTCTTACTGGAATTCTCCTTCCAATCTTAAGAAACACGTTGAAGAAAGCATGGTAGCCACTTCCAACAATATACTGCCCTAACAGCGCCAAGGAAAAGAAAAATGGTGAGTGAGGAGGCTCCTTCAACCTCTAGACAGCTGAAGCTGTGAGAAACTAAGCTAGTCACACAGAAGACTGTGGATCAAGCAGTGTTGAATTTTGTCTGCAATCCTTGTCCCGAAATTTAAAACATCCTGGACGTCGGATGAACACATTGTCAAACTGGGCCTGGACTACATCAAGAACCATATGGAGGAACAGACTTCGAATCAACCACCAGCTGATGGTTCCAGTGCCTCTGAGGAAGAGGACTTCTTTGCAAGCATGAAGCCTACTCATGGTCAGGAAGGTATCAAGCAATTAGATGGCTACCTGGCATGCAAAGCTGATGACAAAGAAATTCTCAAGTCCTTCCCAGCAGTCTGTAAGTTGTCTTTGAAAGTCAACACTGCTTTACCCACTTCTGTAGCTTGTGAACGTCTTTTCAGCACAGCAGAGCTTATTTTCAGTCCTAGGAGGGCAAGAATGGACTCAAAAAACTTTGAGAATCAGCTCCTTCTCAAGCTGAATAAAAAATATTGTCACTTTAGTTAGATCATCAGTGCCATACTGTACTAACACGCTCACCAGAAATGTCATTTGACATGTTGTGTAATTTGTTTTGATATTTCCACACATACACACACAATATATACATTTACCAAGTATCACCAGGTTTCATGTGAAGCAGTATAAGAATGCACAAACACTGACAATCATACATGAAAGCATTACAAAACTGATTAATCCAAGTTTTTATAAAACTAAAAACTGTTACAATAAACCTTAAATTGAATCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451956 lncRNA upstream 34585 715536 ~ 715762 (+) True G394544
TU451933 lncRNA upstream 43057 699784 ~ 707290 (+) True G394521
TU451929 lncRNA upstream 44291 604240 ~ 706056 (+) False G394519
TU451899 lncRNA upstream 105352 480250 ~ 644995 (+) False G394493
TU451898 lncRNA upstream 105352 642525 ~ 644995 (+) True G394493
TU451977 lncRNA downstream 5335 758005 ~ 760127 (+) True G394561
CI01000222_00695056_00696916.mRNA mRNA upstream 53301 695056 ~ 697046 (+) False CI01000222_00695056_00696916
CI01000222_00631228_00636853.mRNA mRNA upstream 113494 631228 ~ 636853 (+) True CI01000222_00631228_00636853
CI01000222_00584243_00585193.mRNA mRNA upstream 165129 584001 ~ 585218 (+) False CI01000222_00584243_00585193
CI01000222_00531504_00560379.mRNA mRNA upstream 189633 531155 ~ 560714 (+) True CI01000222_00531504_00560379
CI01000222_00328639_00330158.mRNA mRNA upstream 419973 328639 ~ 330374 (+) True CI01000222_00328639_00330158
CI01000222_00772007_00787456.mRNA mRNA downstream 19192 771862 ~ 787590 (+) True CI01000222_00772007_00787456
TU451880 other upstream 53488 696788 ~ 696859 (+) True CI01000222_00695056_00696916
TU451881 other upstream 53488 696707 ~ 696859 (+) True CI01000222_00695056_00696916
TU451875 other upstream 287881 461989 ~ 462466 (+) True G394482
TU451654 other upstream 601437 132044 ~ 148910 (+) True G394294
TU451651 other upstream 638224 109188 ~ 112123 (+) False G394293

Expression Profile