RNA id: TCONS_00019307


Basic Information

Item Value
RNA id TCONS_00019307
length 7349
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_009613
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1776515 ~ 2105556 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCTGCCATCACTTCACGCACTCAGTGTACAAAATCTACAGCCATACCACCCGATTACACGGTCACATCgctttataaatgtctttaacGATTAAACTCCCAGTAAACATCGCCGAATGCTCTTTATTCTGGAGTGTATTTTCGCTGTGTGTCTTTAAGCGGGAGTTCTGTTTGTCCGACAGGAGGCGTGTCTCCTccacagagctccatctgaaCATATGAACTATACCGCTCCATCTGTACTCACTTCATCAGCCCGAGCTGCTCTCCACATCCGAGGCACGCGCCGCACATGGATTTCTCCCGGATTTTCCAGCTCTAACATGGACGCCCGGTTGGAGGGTTTTTCCTTTGCGCAGTGAGACGGACATGCGAAGAAGCGTCGCCCATGGAGTGTCCTCTTCTGTCTCAGTGACCATGCCGTGATCACACACACGCGCCGCTGAATCAAACACCTCCAAAAGCACGAAACAAGTGGGGAATCTTTACGCTCCGTCCTGGGGAATGACATGCAGCGCATCGCAGGCATCACGAAGATGGTAACTCATCGGAGATGGCTTGGGCTGTTGCTGCTCTTACTGTGTGTGGGATATTCTCACGGGATGCCACATGTTTTACGATTCGgGGGGATATTTGAATCCATCGAAAGTGGCCCATCAGGTGCTGAAGAACTTGCCTTTAAGTTTGCTTTAAATACAATCAACAGGAACAGAACTTTACTGCCAAACACCACACTCACATACGACATCCAGCGGATAAACATCCACGACAGCTTCGAGGCCTCCAGAAAAGCTTGTGACCAGCTCTCTCTGGGAGTGGCTGCCATCTTCGGGCCCTCGCACAGCTCCTCTGCCAACGCGGTGCAGTCCATCTGTAACGCTCTCGGGGTGCCACACATACAGACCAAGTGGAAGCACCAAGTGTCAGACAACCGAGACTCCTTCTACGTCAACCTGTACCCCGACTTCTCCTCCCTCAGCAGGGCCATTTTAGACCTGGTGCACTTCTTCAAGTGGAAAACGGTCACCGTGGTTTATGACGACAGCACAGGTCTGATTCGATTACAGGAGCTCATCAAGGCTCCGTCTCGTTACAACATCCGATTAAAAATCCGGCAGCTACCAGCAGACACAAAAGATGCCAAGCCGCTTCTTAAAGAAATGAAACGAGGGAAAGAGTTTCATGTGATCTTTGACTGCGGGCATGAGATGGCGGCGGGCATCCTGAAACAGGCTCTCGCCATGGGAATGATGACAGAGTATTACCACTACATTTTTACTACCCTGGATCTCTTCGCATTGGACGTGGAGCCGTATCGCTACAGCGGAGTCAACATGACTGGATTTCGTATCCTAAACACAGAGAACAGTCAAGTGTCCTCCATCATTGAAAAGTGGTCCATGGAGCGTCTACAGGCACCTCCTAAACCCGATTCTGGCCTCCTCGATGGCTTCATGACAaCAGATGCTGCCCTGATGTATGACGCGGTGCATGTGGTGGCTGTTGCAGTCCAGCAGTCTCCTCAAATCACCGTCAGTTCACTCCAATGTAACCGGCACAAGCCCTGGCGATTCGGCAACCGATTCATGACGCTCATTAAAGAGGCCCACTGGGACGGCTTGACCGGACGGATAAATTTCAACAGGACCAACGGCCTGAGGACAGATTTCGATCTGGATGTGATCAGCCTGAAGGAAGAGGGGCTAGAGAAGATTGGTACGTGGGATCCTGCAAGTGGTTTGAACATGACTGAAAACCAAAAGGGAAAGACGGCCAATGTGACCGACTCCTTGTCCAACAGATCATTGGTGGTGTCCACAATACTGGAAGAGCCGTACGTGATGTTCAAGAAGTCGGATAAGCCGCTGTATGGTAACGATCGTTTCGAGGGTTACTGTGTCGACCTGCTGCGTGAGCTCGCCGCCATCCTGGGCTTCGGTTATGAGCTGCGTCTGGTGGAGGACGGACGGTACGGGGCGCAGGACGAGAGCTCGGGACAGTGGAACGGCATGGTGCGAGAGCTCATGGACCACAAAGCTGATCTTGCAGTGGCGCCGCTGGCCATCACATACGTGCGGGAGAAGGTCATCGACTTTTCCAAACCCTTCATGACGCTGGGGATAAGTATACTGTACCGAAAACCCAACGGCACCAACCCGGGGGTCTTCTCCTTTCTCAACCCCCTGTCCCCCGACATCTGGATGTATATTCTGCTCGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGCCCCTACGAATGGTATAACCCTCACCCGTGCAACCCCGACTCGGACGTGGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGATCTGAGCTCATGCCCAAAGCCCTTTCCACCAGGATAGTAGGAGGAATCTGGTGGTTTTTCACCCTAATCATCATCTCCTCCTACACGGCCAACTTAGCTGCCTTCCTAACGGTGGAGAGAATGGAGTCTCCAATCGACTCGGCTGATGACCTGGCCAAGCAGACGAAGATTGAGTACGGAGTGGTGGAGGACGGATCCACAATGACCTTCTTTAAGAAAACGAAGATCTCCACGTATGATAAAATGTGGGAGTTCATGAGCAGCAGACGGCATTCGGTCATGGTGAAGAGCATCGAGGAAGGAATTGAGCGCGTGCTGACATCCGATTACGCCTTCCTCATGGAGTCCACCACCATCGAATTCGTCACGCAACGCAACTGCAACCTCACACAGATTGGAGGACTCATAGACTCCAAGGCCTATGGAGTTGGCACCCCTATGGGCTCTCCGTACCGGGATAAGATCACCATCGCCATCCTGCAGCTCCAGGAAGAAGGGAAGCTGCACATGATGAAGGAGAAGTGGTGGCGAGGAAACGGCTGTCCTGAAGAGGAGAATAAAGAGGCCAGTGCTCTCGGCGTCCAGAACATCGGCGGCATTTTCATCGTTCTGGCAGCCGGACTCGTCCTGTCTGTGTTTGTGGCGGTCGGAGAGTTTCTCTATAAGTCCAAACAAAACGCACAGCTGGAAAAGAGATCCTTCTGCAGCGCCATGGTAGACGAGCTCCGGGTCTCCCTAAAATGCCAACGGAGGCTCAAACACAAGCCTCAACCACCCGTCATGGTCAAAACAGACGAAGTTATCAACATGCACACTTTCAATGACCGAAGACTGCCGGGCAAAGAAACCATGGCTTAAAAAACAGACACCAGCTCGCTCTTTCTTGAGCTCGGAGAGTTTGGGAATTTGGGTCGGTTTTCTATACGGGGGGGGTCTTAAATGTCATTTCAAACAATTgggaataataaaaaacaaacaacaacagcagaAACGGAAACATATTTCCTGTGGAAATAACTTGAATCTGGGCAAAAGAGAATGTTAGTTACCTCTTTGCTACAGATCACCACCAGAGCAAAAGACTGAGCATTGCCAGCGTACTTTTAGCAGGAAATGCAGTACACTGAGGTTTGTCTGcttattgtgtattatttttgGGGTTTGATGACACACTTGGCTGTCCATAGAGGGAACGAGGAGTCGTGTCCTGACAAGCTAAAGAAGGACAGGTTTTTAACACACACTGTACACCGGAGCAACGTTTCGAAAAGTGCTCAGAAACAATCATTTGCTGAGCGCCACAGCAATATCACTGAAGTCACGCGATATGATTTTATGTTCGCACCCACACTAACAAGCAATGGATGCAGGACAGCAACAGGCAATACACCACTTTCATTTCCTCGCATTTTCAGGCCCCCGCTGAACGTCACGTGTAAAGAAAAATCACTGAGAAAAGAAAAATAACTCACCACCAATCACGAAAAGGCTTTTTCATTTACTCAGTTAATTTGAtagttttgattattattttgaaacgtgtaaaattaatttaatccaaacTCAAGCTagcaaatcaatcaataaatgtactctttttttattttatttatgcaaaaattatctaaagacatttttaaaaaggtacttcTTTTGGAAAAGCAGAATCTTATATTTTACCtgttttattatagttattatctattaaatatcattaaattccaattaaattattttcttttttttctgagtcATCGTCATCCCTCCCAATATAACCCACCAAGAATCTAAttttaaaggctttttttttcacatttattttgatgtttttttttttctctccaggactgatgcatctttttttttattttaacttattgtaaattaatgtaaatcAAACTCAAGCTCAcaaatcaatatatattttattattattattattctttttataattttttttttttttttggagaagcAGAATTGCATAAGATTAAATCTTATATGCATTTTCAGGCCCTGCTGAACATCAcgtctaaaaaaaaacattgaaaaaaatttaaataacccACCAAGAATCTGTTTTTGaaggtttttttcttttatttaattattttgattgtttttttctctctccaggacttatgcatcttttttttaaattttacttattgtaaaatgaatgtaaatcaaACTCAAGCtagcaaatcaataaataaatgcactcattttattattttatttatgctaaaaatatctaaacacttttaaaaaagcttttttttgtagGGGGGGGGCAGAATTGCATAAGATTAAATCTTatattttacctctttttttataattattatcaattaAAAATGAATCTAATTCCAATTAAatgactttgttttttttctgaatgatcGTCATCCCTCCTACAGTATATATTATGTTTCATGgaatgtaatatatattatagaccatttcaatgtggtcatatCATTGGCCCATGACCATTTTCcggcttgttatcaaactatttcataactataacaagaggcaattcaatcataacttcatgttaaaGCAGCTATCATAAcactatttatcaatatgtggaccttttttggattctcggaagctctTGGTGAAGCAGAACTGCATAAGATTAAATCTTATGTTTTACATCTTCTATAGTTATTacctatttaatattaatttaattccaaataaattactttttttttttcttagtgatCTTCATCCCTCCTACAGCAATGAATGCAGGACAGAGCAACAGGCAATACACCACtttcatttgtttgcattttcaGGGCCCTGATGAACATCATGTGTAAAGCAAAATCactgagtaaaaaataaaaacataccaaTAATCTTcttttaaaggctttttaaaaatttattcaattaatctgattgtttttttatttaatttttctcttCAGGACTGgtgcatcttttttatttttaaacttattgtaaaattaatgtaaaccaaACTCAAGCtagcaaatcaataaataaatgtgctctttttatttaatttatgctaaaaaatatctaaacacattttaaaagatgCTTTTTTTTGGAGAAGCAGAACTGCataagattaaatttttttattattatagttattatctattaaatattaattacatttttcccGAGTGATTGTCATCACTCCTACAGCATATATTATGTTTCacagattataataaatattaaaatccaGTCAGCATTAAATTCAGTACAACAAatacacatattttatttattacagtttttcattATAGTACTGacagtaaatgtgtttttatatgcCATGACAGTTATATCAATTGAATAAACAACTAATGGGCctaatttttgttttacttatgctataatacagtatatattggtaatgattattttatttctggaTAAAATACCAACACATTCCACcacactgaaaacaaaataattatttagagatgattccttggatttactaaatttttttacattaagtggctttaaactatttatttgggctgaatttaaacaaacataattaatttaatttgtttaaattcaactcaaataaattgttttgcaGACATTATTTTTTAGTGCAGATTCATCAGATAAAGTCTTAAAGTGTTTAATAAAGAAGCTTAATTTGCGGTGTATCCATTTATAATTCGGTTTATTTTTGAGTCTCTCCATGATGATCACATAAACGATGAACACGTAGAGCTGATATTAACACTTtgtctgtattttattttcaataactgCGTTTCAGTTCAGCGTCATGTTTGTACTTTGTGGATTTGATTTCCGAATACAGAATCCTCATGTAAACTTGTGCAAATgtaagatttatatatatataaaaacagaaaatattaaggTGTTTTGTACAATTAAAGAATATGGacattttgtaataatttttatcGACACAAATCAATCATTGGCATATCTCTGTCTCGATACGGGCTGGCAGCCAGTGGAAGTCCTGCTCCCAAATTGAATCTCATGATGGgatttccgttttttctgccagGCTTCACAAACAGCAAAGGGGAAGAGCTGAGCATGCCTGGTAGTGCCGacgtgacacaaacacacacattttggaCAGATCCTATTTTTATCATGTAAAGGAATCATATTTAAAGAAAGATATTTTTACTTGTGATAAATAGAAGCGACAGAACCGATTGAGACGTGTGATATGTATACATAGATCTACAAAGTGAAGCGGACTGCTAATATACTTCATACTCAATGCCCCCGGTTTCTAATAGACTGCTAGTGCTCTCAGTGCCCAGACGTCGTGTGTAAATGGTTTCAAAATGGATAAGAtgtatttaaagattttttggtTTTCAGATACAAACTAATTTTGACCATATTGTGAAAACAAAACGAAGTGCACACAGTTTCCTGTCTGAAGTTGATGCACAAGTTTAAAggaagtaattaaaaaaaatcagcacACTTGGGTTGTGGTCTcctgtttatttgtatttgttttctgcATTTCTGAATgtttctgtgggcgcaaatgccttgttgatgccagaggtcagaggagaatggccagactggttccagctgatagaaaggcaacagtaactcaaataagcactcgttacagccgaggtctgcagaagagcatctctgaactcacaacacgtccaaccttgaggcggatgggctacagcagcagaagagcacaccgggtgccgctcctgtcagctaagaacaggaaactgaggctacaattcacacagactcaccaaaactggacaatagaagattggagaaacgttgcctgctctgatgagtctccatttctgctgacacattcagatgctcgggtcagaatttggcctcaacaccatgaaagcatggatccatcctgccttgaatcagcagttcaggctggtggtggtggtgtaatggtgtggggg

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-080414-1 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

Ensembl:

ensembl_id ENSDART00000180026

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021862 lncRNA upstream 80893 1720759 ~ 1721414 (+) True XLOC_009611
TCONS_00021861 lncRNA upstream 403389 1396223 ~ 1398918 (+) True XLOC_009610
TCONS_00021860 lncRNA upstream 766354 1032575 ~ 1035953 (+) True XLOC_009602
TCONS_00021671 lncRNA upstream 1159398 616213 ~ 642909 (+) True XLOC_009600
TCONS_00021670 lncRNA upstream 1290047 493850 ~ 512260 (+) True XLOC_009598
TCONS_00021866 lncRNA downstream 16115 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00021867 lncRNA downstream 16128 2121684 ~ 2176051 (+) True XLOC_009615
TCONS_00021868 lncRNA downstream 947868 3053424 ~ 3059091 (+) True XLOC_009625
TCONS_00021672 lncRNA downstream 1030602 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021675 lncRNA downstream 1041706 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00019305 mRNA upstream 402979 1383914 ~ 1399328 (+) False XLOC_009610
TCONS_00019304 mRNA upstream 405201 1362250 ~ 1397106 (+) False XLOC_009610
TCONS_00019303 mRNA upstream 442404 1353894 ~ 1359903 (+) True XLOC_009609
TCONS_00019302 mRNA upstream 443191 1334431 ~ 1359116 (+) False XLOC_009609
TCONS_00019301 mRNA upstream 480716 1254390 ~ 1321591 (+) True XLOC_009608
TCONS_00019310 mRNA downstream 328140 2433696 ~ 2434462 (+) True XLOC_009617
TCONS_00019311 mRNA downstream 364333 2469889 ~ 2472577 (+) True XLOC_009618
TCONS_00019313 mRNA downstream 459877 2565433 ~ 2583278 (+) False XLOC_009619
TCONS_00019312 mRNA downstream 459877 2565433 ~ 2583278 (+) True XLOC_009619
TCONS_00019316 mRNA downstream 714784 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019306 other upstream 61249 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 581745 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 589519 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019309 other downstream 178500 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 623817 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019326 other downstream 1247945 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 2592257 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 2664823 4770379 ~ 4779952 (+) False XLOC_009652

Expression Profile

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