RNA id: TCONS_00021866


Basic Information

Item Value
RNA id TCONS_00021866
length 1242
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_009615
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2121671 ~ 2176051 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTTTTTTCCGGCTCCCCCTTGTGGTTGATGAACGCTACTGCCAGTTGCTAGCGTCATAAAAATGTTGCTGATCTCACGAGCATTTGTTGACTGTAAACCGACACCTCGTTTGTAACCCACGTCCATCAACAAGGTCAGGATTTCTTCTCGGAGCAGGCTCCTTATTCCAGACACAATGCTGATGGGCTCACAGCGGCACGCGCTAGCGCTGGAGTGCAGTTCAGTGTGGATATCATCAGCAATCCTATCACATCATTGTGCTCCAACTGCAATTTTTCCCCGGTcaatgacacaaagagagaaagcGTGCGAGAGACGGGCGGACAGAGAATTACAGTAGTCACCTCGGCGGTGGAGGGTACTAATGGAAGTTTTTGGAGCCTTTGGACCACACTGAAAATGAAGAATGAAGGGATGCTGTGAAAGTGGTAATACAATAAGGCTAAGGTAATTGCTCTCAGTTCAAAACTGAATGACAAATGTCTCGGGCGCAAAATGAGATTCGTTCTTTCATGCTCCCGTGCTTTATAAAACAGTTCTCTCACTTCTATTATGCTGGAATAAAACGGCTGCATGAGTGATTCAATTCAAATCAAACTCTTGGCCTGGTGAACCTTGGAGTAGTCATTTTGAGAGCGAGCGACTTGAGAATGATCAAGTTTGCCTCATTGACATACAAACATCTTTTCTGGGGGCTCTTCTGGCCAAAGAATTAGTTTTTTCAACTCAAAGTTGAGTTTCAGCTTAGAAGGCAAGTGTGCTAGAATAATACTCTGACTGTAATGTCTTGTATTACATTAATATGCTGTAGAAAACAATGTATTATGACTAgcgccagacagaatctgcagatattttttgctatttctgcagagaattttgtagaATATCTGCAAATTCTATGAGGAATGATTATGAGAGTATTGTAACTAAaagcttaatatatgaaataaaaataatacctttttagctataaaggtgcagtatgtaagtttgaaacccagtggttaaactaggtattgcacgcctggttcaaaacacatgcaagcgcaggttgccagatgacaacatcaacaggagtgagcctaaaggctgatttaaactgtgttttaaataaaagcaaaggcATGTGACAGATGGATTATTTACCATATTAACaatcctaaccaacacctgaaatgtatattttagaaacggctgcTATCtcagctgaacaacagaataaattgacaatgatcag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021865 lncRNA upstream 260511 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021864 lncRNA upstream 304123 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021863 lncRNA upstream 304123 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021862 lncRNA upstream 400257 1720759 ~ 1721414 (+) True XLOC_009611
TCONS_00021861 lncRNA upstream 722753 1396223 ~ 1398918 (+) True XLOC_009610
TCONS_00021868 lncRNA downstream 895417 3053424 ~ 3059091 (+) True XLOC_009625
TCONS_00021672 lncRNA downstream 978151 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021675 lncRNA downstream 989255 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021674 lncRNA downstream 989255 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021673 lncRNA downstream 989255 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00019307 mRNA upstream 16115 1802307 ~ 2105556 (+) False XLOC_009613
TCONS_00019308 mRNA upstream 16115 1803462 ~ 2105556 (+) True XLOC_009613
TCONS_00019305 mRNA upstream 722343 1383914 ~ 1399328 (+) False XLOC_009610
TCONS_00019304 mRNA upstream 724565 1362250 ~ 1397106 (+) False XLOC_009610
TCONS_00019303 mRNA upstream 761768 1353894 ~ 1359903 (+) True XLOC_009609
TCONS_00019310 mRNA downstream 275689 2433696 ~ 2434462 (+) True XLOC_009617
TCONS_00019311 mRNA downstream 311882 2469889 ~ 2472577 (+) True XLOC_009618
TCONS_00019313 mRNA downstream 407426 2565433 ~ 2583278 (+) False XLOC_009619
TCONS_00019312 mRNA downstream 407426 2565433 ~ 2583278 (+) True XLOC_009619
TCONS_00019316 mRNA downstream 662333 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019306 other upstream 380613 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 901109 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 908883 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019309 other downstream 126049 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019314 other downstream 571366 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019326 other downstream 1195494 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 2539806 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 2612372 4770379 ~ 4779952 (+) False XLOC_009652

Expression Profile

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