RNA id: CI01000225_00111148_00126263.mRNA


Basic Information

Item Value
RNA id CI01000225_00111148_00126263.mRNA
length 3469
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000225_00111148_00126263
representative False

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 110001 ~ 128097 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTTCTTATTTTAGACAGTTTAATCACAATTGTCTAGACAGGCTGTTGCACTTCTGAGCTACGCACAGTCCAGTTCATCTGTCTGAGGCGCTCGCTCGCCCCCTCCACAGCGCTCTGTCGCAGGGTTATATCAGTCTCTGCACCGGTCTCAATCTGGCCCCGGGCGTCTGCGCTGCTATGTATGCAAAGCAGTTCGCAGATCACATGATCAGAGTGACGGAACAGCATCTCTTCTCCCAAACACTGTGGCCACTGCCTGGCGTCCCAGAATACCTACACAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAAAATGAATTCGGCTAGGGTCGTCATCATTGACGTCTGTGTCTCTCTCCTCCTACAGCTCTGGTGCTATGACAACAACGCTGCTGCCTTCCCACCAATCACACCTCTATCTTCACAGAGACATAAGCATGCTGTTCTGTCCAAATATTTAAGATTTAACCTCTTCGGCTGGGTATTGTGGCATGTGATAGATGTTTTTTTGTAGATTCCAACACTAGATGTAATGTAAGGTCATGATGGGTGAATATTACAAAACATTTTTAGGGCCCGAACATGTCTGGGTCATATTTTTACCACAAAATCAAAAGAAAAAAATACTAAATTATATTTTGCATGATGAAATGGAATCTATTTATAGATTTATTGCATTTTGACATTATTTTAATGACAGTTAAGCACATATTTCCTCCGTATTCTCATTACTATAATTCAATAAAAATATAATTTTCATTATTTTTATGTGAAAGCAAAAATTATATATTATTTAAAATATTTGTGCATGGTAGAATTTGTGTTGCTTTTATTAAATGTATTAAATAATGTTGATTAAAATCATTAAAAAATCATTGTATTTCAATAATCTATTGACAATAACAGAAATTACAGAAAAATCATCAAAAATAAAATGTCCAAGACATATGTTAGTAATGAGAAAATGATGTTTAATTGTCATTAAAAAAATATAATAAAAAAAATGTATTATGCTTCTAAAGTCAGTATTATAATTAATATTTTTTTCTTTTTATTTAGTGATTAAATGCCTCCTAGACACTTTTTCTTTTCTTTTTTTTTTTTTTTTGGTGGGATGCACTTTTTATTTTGTAGACTTTTGCAGACTTTATTTGGCAGAAGTTGCCCATGGGTAGGCGGAGCTCTGCGGTTAAGGTGTGAGAAGTGGGCGGGGTCCGTGTTTGTGAGAGGCGGGTTTGAATTCTTGTGTAAATTTGATGCTCTCCGCAGGCTCATACCAGAGCCGTTCAGACAGACCAAAAGGAGCAGAACCACACACATTCCTGCTCCCAATCTCACAGTGATTCCGAGGCAGAAGGAAAGGGGGAAGGGGAAGGAGGTAAAGAGAGTGTGGGAGAGGGGAGGAGAAGATTGGTGAGAGAAGAGGGGGGGATCGTTGAACGGACACAGCCCCCCATCCCAAGCTGTTTCAGTTCCCGTCCACTCACGTGGGAGTCAGTATGTTGTGGAGTTTGAGACGGAATGTGGATGCCGCTGCAGGAAACATGCAATTTTAGAAAGGACGTGTGTCATTGGGTCACAGGATCGCCCCCCTGGGAAGGTCTTCTGTGTGTCTGGATATTGAGTCGACCTGTCACTCGAGGGGATCCTCTGAAAGACCTGTCAATCATTCGTCACACCACAGTGACCTCCCTGCACAGTTTTTCCAGAGGCACATACTTTAAAATCATAAAATGTTCTTATATTTCTAAACCTCATCACACTGGCTGTGTGTTTTATGTTGCATTCGGTGTCTCTTTCAGGCAGATGGTAAATCTGTGCTGTTTTCATTATTGCTGCAATACCCCTCCCGGCGTTTCTCAATTAAACGTTTCTACAGCTTCTGAACTAATTCAGCAAGCAACACAGACAACAAAACAGCATTACAGGTGCATTGTGGGTATTACTAGAATGGCTTGTTTCCAGACCATCTCCAATATCACGCTCTTAAAAACATCTCGTAAAAGAGGATCACCCCTGGAGCATGTCACAAAAACATCACACTTATCCTGGCATGTTTTGTTTCCAGCTGCCTCTGAGCGTTCTCCAGCTCCCACGCTAAGAAACGCACGTCAGGTTGAGCTTTGGGGCAAAAGGTCATGGTATGTCTCTAATGTGTGTTCAGGGGACTCTAATAACAAAGGACAGCAAAATACACCTGTCACATTTTTTGGAAGATTTGCAGGGATCATATCAGCTAAAGCAGGCCGTTATTCACAGAGAGGATATTTCACACTGGAGCTCATCTCAATAACTGTTGATAAAACAAACATGCTTTGAATATGAATGAGTGTGGTAGGTTTGCATTTGAGTTTACTGCTGTCTTCAACTTGTTTTTGGTGGCATATAAATGAGAGGACCAGTAATGAGCTGGTTAACAAGATTTTGTAAATATAATAAGGTCCCATTAGTGCAGCAAATAACATTAAAGGATTAGTTCACTTCAGAATTAAAATTTACTGATAATTTACTCACCCCCATGTCATCCAAGATGTTTATGTCTTTCTTTCTTCAGTCAAAAGTAATTAACTACGTCACGCATGACCTTTCCAACGTGATTACGTGATGTGTGGTGCATCACAGAGATAGTGCAAGATGAACATTAGTGGTTAAAAAGTATATACATTTTTATTTTTTTAGAAAATGATGATTGTTTCTCTAGATAAGACCCTTATTCCTCGTCTGGGATTGTGTAGAGCCCTTTGAAGCTGCACTGAAACTGCAATTTGGACCTTCAACCTGTTGTACCCCAGGGAAGTCCACTATATGAAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTTGACTGAAGAAAGAAAGACATGAACATTCACCACTGGGGGGCGTGACTTTGCCAGTTTGATACACGCTTCGAACCACTGATTCAAAACAAAAGAGATTGGGAGTCAGTGCCGAGGCGTTGTTTGTGAACATGATGGTTATTATAGTCATAGACTAAATGTGAACATGCATGACATGGGGGTGAGTAAATTATCAGGAAATTTGAATTCTGAAGTGAACTAATCCTTTAACTAATAAGGAGCAATACATTTGTTACAGTATTTATTATTCTTTGTTAATTTTAGTTAATAAAATATACAACTCTTCATTGTTAGTTCACGTTAGCTCAGATCCATGAAATAATAATTATTTTTGCGAGAGGTCCCGTTTTCAAATCCCGTACGAGCCCCCATTTGTGTTAGTAAATGATTTAGCATGGTGCTTTGAAGTTGCTAGAGTGTTCTGGGTGGTTGCTAGGGTGTTGCTAAGGTATTCTGGGAGTTTTTAGAATGTTGCTTAGAAGTTGCTAGAATGTTGCTTTACAATTGCTTACATGTTCAAATCACTAACCCTGTCATTGGTATGAGTACTAGTAAAAGTGGTGCTTGACTTAGCAAACATTCCTGATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452702 lncRNA upstream 59055 186842 ~ 187202 (-) True G395114
TU452712 lncRNA upstream 65523 193310 ~ 194560 (-) True G395123
TU452731 lncRNA upstream 92677 220464 ~ 234314 (-) True G395142
TU452739 lncRNA upstream 121434 249221 ~ 249430 (-) True G395150
TU452981 lncRNA upstream 285956 413743 ~ 414066 (-) True G395330
CI01000225_00052354_00104366.mRNA mRNA downstream 3850 52092 ~ 106151 (-) True CI01000225_00052354_00104366
CI01000225_00044417_00045162.mRNA mRNA downstream 64839 44255 ~ 45162 (-) True CI01000225_00044417_00045162
CI01000225_00041381_00042262.mRNA mRNA downstream 66885 40999 ~ 43116 (-) True CI01000225_00041381_00042262
CI01000225_00035782_00036621.mRNA mRNA downstream 73380 35116 ~ 36621 (-) True CI01000225_00035782_00036621
CI01000225_00031098_00032138.mRNA mRNA downstream 77863 30596 ~ 32138 (-) True CI01000225_00031098_00032138
CI01000225_00166452_00178904.mRNA mRNA upstream 36482 164269 ~ 178904 (-) True CI01000225_00166452_00178904
CI01000225_00195825_00204991.mRNA mRNA upstream 67922 195709 ~ 204991 (-) True CI01000225_00195825_00204991
CI01000225_00383340_00392393.mRNA mRNA upstream 255300 383087 ~ 392393 (-) True CI01000225_00383340_00392393
CI01000225_00393863_00402338.mRNA mRNA upstream 266076 393863 ~ 402538 (-) True CI01000225_00393863_00402338
CI01000225_00404519_00407448.mRNA mRNA upstream 276588 404375 ~ 408629 (-) True CI01000225_00404519_00407448

Expression Profile