RNA id: CI01000225_00383340_00392393.mRNA


Basic Information

Item Value
RNA id CI01000225_00383340_00392393.mRNA
length 2759
RNA type mRNA
GC content 0.43
exon number 11
gene id CI01000225_00383340_00392393
representative True

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 383087 ~ 392393 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATGTGGAAGAGCAGGTTATTCATGACACAACAAAAAACCATCATTCAGTTCGACTGATTCACGAGGACCAGCAGGTTGTATTCAGAAGATACTGTACATGTTTGATGGAGAGATCAGACTCTTCTGGCCCTAGTGTTTTGTCCATGAAGAGTGACCGATCCATGCAAATACCAATTCAACTGAAAAATGGATCAGCTCCAATGGAAAAAAGTTTGATGGAGAGATCAGACACTTCTGGCCCTAGTGTTTTATCCATGAAGAGTGACCGATCAATGCAAATACCAATTCAACTGAAAAATGGATCAGCTCCAATGGAAACAAGGCCGGGTGAGGTTTCCCGTGTCCATAGACAGCAGAGCGATGTGAGGTTGTGTGATGTAAGTGAATCAGCCTCAGTGGACGTGCTGCTGATGAACCTCATTGCGGGGAATCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCTGATCTCGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCATCAAGGAGCCTCTACATCATGTGCCACATCCCAGTGTTCTGCTGGATCTCAGCCGCTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGAGTGGAGAGATTCCCAAGACTCTCACTCAAATGTACACACACTTCCTGATGGCACAGATTAGCATCAAAGATACAAAGTATACTGAGGAGGAGGACAAAGATAAAGAGATGATTTTCAAACTAGGGAAACTGGCATACGAGCAACTGGAAAGAGGCAATGTGATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTGTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTGGTATCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCGTTCAGGAACATCTAGCGGCTCTATATGTGCACCTCTCCTTCCACAACAGTGGCAAAAATGTGCTTGAAGCATGTGAATCTGAAGCGCCTGTGACAATGTTGAGTTTACACAAATGTGCAGTTAAAAAATCTTTAGAAATTATGAATGGACATCTCGACCTTTTCCTTCGCTTCCTCATGGGACTTTCACTGGAGTCGAATCACAACCTCCTAAAAAGGCTTTTGGTGAAAAAGACAGGAAGTTCCCTGGAAAGAAAGAAAACTATTGAGCATCTCAAGCAAACGATAAAAACAATCCCTTGCTCAGAAATGACTATTGTTTTGTTTCACTGTCTGAATGAACTCAATGATCATTCCCTCATTACTGAAATCCAAAGCTACCTGACCTCTGGAAAAATAAACAGCGATACTCTTTCCCCAGATCTCTGGTCAGCTCTGGTGTACATCTTAATGACATCAAATGAGAAGTTCAATGAGTTTGAACTTCGTAAATACGGAAGATCGGACACGGCTGTATTCTGGTTGCTTCCTGTGATCAAGTTGTCAAAAAAAATCTGGATGCATGACTGTAATATCACAGAAAAAGGCTGTGCGGTGCTTTCTGCTGTTCTTCCATCAATATCTAATCTCAGAGAGCTGGACTTGAGCCACAACAACCTGCAGGACTCTGGAGTGGAAATACTCTGCATTGGAGTGAAAAGATCACACTACGACTTAAAAAAATTAATGAGGAGTCTGGGTTCTGATGAGTGTGATCCCAATCTTAATTTTGTCGTTCTTCCTACTGCTGGACTACAGGATACAAAGTGTAGGATGGAATCACTCAATCTGAAGAACTGTAAAGTAACAGAAGCAGGCTGTGTTTTCCTGAGCTCAGCTTTCAGTTTAAATCCTTCTCATCTGAAGGTGCTGGACCTGAGCTGGAACAACATAGGAGACTCTGGAGTGAAACATCTCTGTGCTGCTCTGGAGAAAGTTCAGTGCGCATTGGAAACACTAAAACTTTCAACTTGCAAAATCAACGCGGAAGGTTTTGAATCTCTGTCCTCAGCTCTGAGGTCAAACACTCATCTGAGAGAGCTGGACCTGGGCAACAACAGACCTGGAGATCAGGGAGTGGAGCTGCTGTCTGCAGTTCTTCATGATCAAAACTGTAGACTAAAAACACTGAGGTTGGACAAATGTGGAATCACAGAGAAAAGCTGCACCGCTCTGGCTTCAGCTCTCAGCTCAAAGACCTCCAGTCTGACTGATCTGGATCTGAGTATTAATGATCTACAAGACTCAGGTGTGAAGAAGCTCTGTGTCGGACTGCAGAATCCTCACTGTAAACTAGAGAAGCTGAGGCTGTCCAACTGTAATGTTACACATGAAGGTGTGGCGGCACTGACCGAAGCTCTGAAATCAAAGCCATCCCACCTGAAAGAGCTTGATCTGCTTGAGAATGATCTGGAAGAGACAGACTTGAATGTGCTCTCCATGATAGTGGACAAGTCATCATAAAAACAGAAGAACACAACGTTTAAGATAAAAAAAAGAGTGGGATAACTCATAAAATGCATTAATACTAATATCATTGCAAAATGTACTTACAGTACGAAGAGTAACAACATGAACTTAATGGAAAGGGTTATGTGGACATATGTGGATGCTGGATAATGAATATGCATTTTCATTCTGGATACATATAGAGTGCCAACTACAAACAATTTCTTTGAAATTTTATTTTATGAACTAGATACAAAAAGGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452739 lncRNA downstream 133657 249221 ~ 249430 (-) True G395150
TU452731 lncRNA downstream 148773 220464 ~ 234314 (-) True G395142
TU452712 lncRNA downstream 188527 193310 ~ 194560 (-) True G395123
TU452702 lncRNA downstream 195885 186842 ~ 187202 (-) True G395114
TU452684 lncRNA downstream 254990 119985 ~ 125745 (-) True G395099
TU452981 lncRNA upstream 21350 413743 ~ 414066 (-) True G395330
TU452984 lncRNA upstream 23909 416302 ~ 416743 (-) True G395333
TU452986 lncRNA upstream 25921 418314 ~ 418574 (-) True G395335
TU452963 lncRNA upstream 26961 419354 ~ 419651 (-) True G395314
TU453004 lncRNA upstream 60854 453247 ~ 454400 (-) True G395341
CI01000225_00195825_00204991.mRNA mRNA downstream 178096 195709 ~ 204991 (-) True CI01000225_00195825_00204991
CI01000225_00166452_00178904.mRNA mRNA downstream 204183 164269 ~ 178904 (-) True CI01000225_00166452_00178904
CI01000225_00111148_00126263.mRNA mRNA downstream 255300 110001 ~ 127787 (-) False CI01000225_00111148_00126263
CI01000225_00052354_00104366.mRNA mRNA downstream 276936 52092 ~ 106151 (-) True CI01000225_00052354_00104366
CI01000225_00044417_00045162.mRNA mRNA downstream 337925 44255 ~ 45162 (-) True CI01000225_00044417_00045162
CI01000225_00393863_00402338.mRNA mRNA upstream 1470 393863 ~ 402538 (-) True CI01000225_00393863_00402338
CI01000225_00404519_00407448.mRNA mRNA upstream 11982 404375 ~ 408629 (-) True CI01000225_00404519_00407448
CI01000225_00425270_00431446.mRNA mRNA upstream 32206 424599 ~ 431446 (-) True CI01000225_00425270_00431446
CI01000225_00553926_00616121.mRNA mRNA upstream 161533 553926 ~ 616121 (-) True CI01000225_00553926_00616121
CI01000225_00724320_00725003.mRNA mRNA upstream 331908 724301 ~ 725325 (-) False CI01000225_00724320_00725003

Expression Profile