RNA id: TCONS_00019313


Basic Information

Item Value
RNA id TCONS_00019313
length 5909
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_009619
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2565433 ~ 2583278 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTCATGCCGGTACGCGTGCGACGCAGGCGCGTAGGACGTGACGCAGTGCTGACGTGTGCCTAGGTAAACCAAGGAAGTAAATGGTGGTTCTATGACTGATGTTGTGAGACATCCAGAAGGGAAATACAGTGGCATGAGCTCTAAACACCGGGAAAACTCCAGCACGACACCGGAGAGCGTCCGCAGACACAGACCAGAATACAGAGAGCAGAGAGCATCATGGGTAAACGCAGAGCACCTGAGCTTTACAGAGCGCCGTTCCCTCTGTATACAGTGAAGATGGACCCCAGGACCGGCTTGATCATCActgctggaggaggaggagcgtCCAAAACGGGCATCAAGAACGCTGTGCATTTTCTGAGTCTGGATCTGGTGGGCGGTGCACACAGCGCCACCTTGCTGCACACTCATGAAACAGACACTCGAGCCACCATGAACATGTGTCTGGGAGGAGATGTGATGGCGGCAGGACAGGACGACACGTGCAGATTAATGAAGTTCAGTCTTCATGAAGCCAAACACAACAAGAAACCTGCGGCCAAAGATGGGACTGGAGATAAGGGTGGAGCCAGGAAGAGAGCAGGGAAAGGCCAGAATGCGGATGGAGGAGAAGGAGACGCAGCCCAGATGAAGCAGGATTCTACGCAGATCTCCGTGCAGGATTTGGGATCAGTACAGGCGGATTTCAGCCCGCAGGACCCCTGTGTGAAGTGTGTTCGCTTCAGTCTGGATCTAACGCTTCTGCTGAGTGGAGGAGCTGACGGGTTCGTCAGGGTGTgggagtTCCCCTCGCTGAAGGAGAAGCTGAACTTCAGAGCCCACAAGGATGAGCTGGAGGATATAGACATCAGCCCGGATAAAAAGCACATCGTGACGGTGGGCCGTGATTTCGAGTGCAGCGTGTGGAGCGGAGATCAGCTGGCTGTGGGGTTGTGTTGGCATGAAAATATGCCTCAGATCACAGAGAAGACGTACCGATACAAGGCATGCAGGTTTGCAAAGGTAGAGGACCAAAAAGATGCTTTAAGGCTGTATACAGTCCAAATCCCCCACAAACGAGACCGCAAACCCCCTCCATGCTACATCACCAAATGGGACGGTCGAGCTTTCCTGCCGCTGCTCACCAAGCCCTGTGGGAATGAAGTGATCTCCTGTCTGACAGCGAGTGATTCGGGGACATTTCTTGGTCTTGGAACTGTGACGGGATCTGTGGCCATCTATATAGCGTTTTCCCTGCAGAAGCTCTACTACATCCAGGAGTCTCATGGCATTGTTGTGACTGACCTGACGTTTTTACCTGACGCTCCTAAAACTAAAGCCGTCAAAGGAGATAATGAAGTGGTGATGCTGAGCGTGGCGGTCGACAGCCGCTGTCAGGTGCACGCCGTCTCCAACCGCAGTAAGTATCATATACAGACCTTtatcatggctgctgcatggatggtaccatagcgaccagcgtcttccggtagaatgctaaaaacttcggttcacagcgtgtacaactggtcatttgcgctccgaaaatgggtttcaataacgtttttaatggataacagagcgtttatgtgacacacaacttagaaatgtgtctgttaaagccgttataatctgtcacatgtggttcaagcgtgtcaggaatacgagaaaaacgttctcctagttcacgtgtctgccatcagaaatacagtgtgtgtgtgcgcgttcccaacctgtcagctgttagctcagtggctctttaacacacacacacacacacacacacacagagacacacacacacagagacacacacacacacagagacacacacacagagacacacacacagagacacacacagagagagagagagagagagagagagagagagagagagagagagagagtgcactggcatgaaacttaacaggtatgaaagtggtgcaatttacaaaaatgagcaataaaagtctgttattgatcctctgctgctgatttgctgttcattctaatcgcgagccgtttgtgttttattttgtgtgttgtttttatcacggtttgtgtttttctgtcatttcgaaatgactcTAGCctgtattttcactttgtcacggttattaaatcagtgtgtcagtggcacagtacaggctacgtgtgtgtgtcaaacattttggtgaactacattagtttgggctggttatatatttgaaataaagagaaaatgttgactttagcgatgacgaggcttctccttgcgcatacacgcaaagcactatgggtaattttgcgttccaagaaaaaggtctatatatatatatatttggatgtAAACTTGCGCAAGAGGGCAGGTCAATATTTCACTCAGACATCATGAcaattttcccagtgatgggttgcagctggaagggcatccgctgcgtaaaaacatgctggataagttggcggttcattccgctgtggcgaccccggattaacaaagggacaaagctgacaagaaattgaatgaatgaatgaatgaatcatgacAAAATAGCTAAAAATCCTGAAATTGATTTCTGTACGTCTGACATGAATCTGACATGTAAATGACTctcttgtgtttgtgtttaggGTCGTTCCCGCTCTGGCTGGTGCTGTTTTTCTGTGGTCTGATGGTGGTTGCAGTCATTTTGCTCCTGCAGTCATTTTTCCCAGGATTCATCTAAGCTCTGAGCGTAAGCTTTTACACAGTCAAATGACTTGAAGCAAACTGGGATCTATGAAATGGTTGTAATCAGTTGGAAATAGTGATGGGAATGGCCTCATCTCTGGAGTTCTCTGAATCAGATTGGATGAAGAATTTGGGCATAACCTGAGTGAGCAGTTTCTCCCTCATCATTGAGCGAAAAGCTGCTTGTATACAGGACTGGATTTCCTGGTATGGACGTCTGCCGCTCCACCAGTATGTCAAGAAATGCCTTTTAGTGAAACGGAGAAGAAGAAAGCGTGCAGGGAATTTCAATggtgaattattttaaatatttaaaaaatctaaatatacatCTGAAAACAAGCTGCTGCAAGTCtcgcaattatttttgtcatttattaacttttaattttcagtctgCATGACGTTGCAAAATCGccgcatttaaggtctgttttcctAAAAATCAACAATCTTCAATGCATGattgatatatgatatgaagtgggttcagaatgtacactacctgactaaagttgatcatttggtatcagaagtggcttatatgaaaggcaaaggcctctagatgacacttatttgaccacaataatatatgatcatgcctttattctttaattctttaattaggacagtaaggtctgactctgcttagactaaagtctcatcactgaacagaaataatgttgagtatagaatataaagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgattaatgaagtcatctggaatggcaaagaaagccttcttgcaggactcccagagctcatcaagactctttgggttcatcttcaatgcctcctccttcatcttactccagacatgctcgataatattcatgtctggtgactgggctggccaatcctggagcactctttgctttcagaagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaatcgtccctctgctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatccactctgcagatctctcgcacgccctcatactgaatgcGACCCTAAACCATgagttttccttcaccaaacttgactgatttctatgagaatcttgggtctgtgtgggttccagtaggtcttctgcagtatttgtgatgactgggatgcagatcaacagatgaaaaatccaccttctgacacttttccagaTGATCATCTTGatttagaagtcaagttattatctggtGCTCTtgcaactgggattgacgacaagacttttgtcaggtagtttatattAATCAAAGCCTGATAACACAATATCAAATATAGAGgggaaaaaattttaataaaatcttcaatataatacatatacctactattattattattattattattattattattgttttgttcatattaCAAATATACATACAGATAAAGCAAACAGTGGGTAATTTATTAGGTACGTTACTGTAGGTTTATTTATGCGTAGCATTTAagatattataaaaacaaattaataataataatgacagtaataaacacattaagtaaCATTTTAGTACCAATGtacaccatttactactggcttattactagggccacacaaaatctgcattgttttgctatttctgctgagagttttgttaaaatttatgtggaattattttgggattttcataactaaaaacttatatgaaataaaaaataataccttttttacttgtatttaatgtttaaaatgcaaatccaattagatccactttattcgGTAAACAAAGCGAGTCTCTCATATAAAATCTCTACTATAAGACAGACAATATTACTTCACAAACTgtgttgtacataaatcagatgaacattttcacatcagtctataaaattactaaaattaacttaaaaactgagtaaatataaatcaacagatgattcatcagagaaatccTCCTCCTGCTACTTTTccagatgatcaactagaagtcaagttattatctgttgctcttacaaacaactgggatcaatgacaagacttttgtcaggtgttgTACACGAAGcgctgcattaaattccatttttctgcgtcttctttaaaatatgaaaataattttgagtattttcaatggaattatTGCTCTCGCCTGCatgtaaacagcttttcatcttgttttacgcttgaacaacttaATGAAcgcttaagtctgtttaacttttatgtattttaagtacacaacaacatcgatgctgtaaaaggaaccgtataacaTTAAAGTCATATAaatctttcaccagaagtttaggGGTAGGGGAAAAATACTAGctttgcatataccctattaacaGTCCCTTGCATCCCTTGTCTTAAACCATCtcttgactttcttctgttgaacacaacacaagacattttgaagaatgttacaaactggaaaccattgacctccatagtatttcatttgcctttaaatgtcaatggttaccggtttctaaaatccattcattttttttcagcttagtgccttatttatcaggggtcgtcacagcggaatgaaccgccaactattccagcatatgttgtatgcagcggatgcccttccagctgcaacccagtactgggaaacacccatgcacactcattcacacacacacacacactcgtacaatacagccaatttagttcacccaattcacctatagcgcatgtgtttttgactgtgaaacccatgccaacaagggcagaacatgcaaactccacacagaaacaccaactgacccagccgtgactTGAACcagcaccttcttgctgtgaggccaaagTGCTAACCGATgaaccactgtgtcgccccttTCTAACATCTGCTTATCCCTTTaaggtagcgatgtcgcctcacagcaagaaggtcactagttcgagcctatGCTGgttcagttgggatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctcaggcttcccccacagtccaaagacatgcggtacaggtgatttgggttagctaaattgtagtgtgtgaatgtgagagtgtatgggtgttttgcagtactgggttgcagctaaaagggcatccgctgtatgaaacatatgctggataagttggcagttcattccgctgtggcgacccctatattaat

Function

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0003400 regulation of COPII vesicle coating biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0051020 GTPase binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-385 Predicted to enable GTPase activator activity. Predicted to be involved in protein secretion and regulation of COPII vesicle coating. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including axis; nervous system; notochord; polster; and solid lens vesicle. Orthologous to human PREB (prolactin regulatory element binding).

Ensembl:

ensembl_id ENSDART00000188014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021867 lncRNA upstream 389382 2121684 ~ 2176051 (+) True XLOC_009615
TCONS_00021866 lncRNA upstream 407426 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00021865 lncRNA upstream 704273 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021864 lncRNA upstream 747885 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021868 lncRNA downstream 470146 3053424 ~ 3059091 (+) True XLOC_009625
TCONS_00021672 lncRNA downstream 552880 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021675 lncRNA downstream 563984 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021674 lncRNA downstream 563984 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021673 lncRNA downstream 563984 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00019311 mRNA upstream 92856 2469889 ~ 2472577 (+) True XLOC_009618
TCONS_00019310 mRNA upstream 130971 2433696 ~ 2434462 (+) True XLOC_009617
TCONS_00019307 mRNA upstream 459877 1802307 ~ 2105556 (+) False XLOC_009613
TCONS_00019308 mRNA upstream 459877 1803462 ~ 2105556 (+) True XLOC_009613
TCONS_00019305 mRNA upstream 1166105 1383914 ~ 1399328 (+) False XLOC_009610
TCONS_00019316 mRNA downstream 237062 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019315 mRNA downstream 237062 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019317 mRNA downstream 237084 2820362 ~ 2833398 (+) True XLOC_009621
TCONS_00019318 mRNA downstream 257497 2840775 ~ 2844058 (+) False XLOC_009622
TCONS_00019319 mRNA downstream 260150 2843428 ~ 2844195 (+) True XLOC_009622
TCONS_00019309 other upstream 281259 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 824375 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 1344871 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 1352645 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019314 other downstream 146095 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019326 other downstream 770223 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 2114535 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 2187101 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 2190855 4774133 ~ 4776956 (+) True XLOC_009652

Expression Profile

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