RNA id: TU453003


Basic Information

Item Value
RNA id TU453003
length 857
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G395340
representative True

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 462156 ~ 522868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATACACAAACAACAAATGCATTGATGATCATCCCGGCAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCAACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTCTCTCTGCATTGGGGACAGCGGTACGGCGGCCCCTGCTCCTTCTGGCCCCAGCAGTCAGTAATACAGCTCATACAGTAACTGTGTCCACAGGGAATCGTCACCGGCTCCTTCAGCCCATCTAAACAGACTGGACAGCTGAACTGATCCGCATACTGACTCGCTGCAGAATCTGCCATTTTCGCTTTTGTTCTGTAATAAAATCTGTTTTGCCAAGAAAAGCAACATTAATTGTCAAATGCCAAATTTCACTTAAGTTAAAGTATGGATACTGCCAAGATTTTACATATAATCAACAATAACATGAGAGAAGCTTGGGAATATATCATGGCACTTTGCAATCTGTGTAGTGCTCGCCATATTTTAGGACTCTCTGGAGCAAACAGAGGCTGCATCCTTTGAAGGCCGTGTTCGAAGGCCGAATGAATCACAGCAACGAAGCCTGTCTAAATTCGAAGGCTACCTCAAATGTGTTGTCAAAATGCATCTATCGTTTCCCGTGCAATGAGGGATCCAACAGATGGACCCTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453011 lncRNA downstream 18638 460175 ~ 460425 (-) True G395347
TU453004 lncRNA downstream 24663 453247 ~ 454400 (-) True G395341
TU452963 lncRNA downstream 59412 419354 ~ 419651 (-) True G395314
TU452986 lncRNA downstream 60489 418314 ~ 418574 (-) True G395335
TU452984 lncRNA downstream 62320 416302 ~ 416743 (-) True G395333
TU452993 lncRNA upstream 17488 510889 ~ 531490 (-) False G395337
TU452990 lncRNA upstream 30812 524213 ~ 531490 (-) True G395337
TU453020 lncRNA upstream 43451 536852 ~ 537088 (-) True G395356
TU453021 lncRNA upstream 44332 537733 ~ 538115 (-) True G395357
TU453027 lncRNA upstream 54708 548109 ~ 548339 (-) True G395363
CI01000225_00425270_00431446.mRNA mRNA downstream 47617 424599 ~ 431446 (-) True CI01000225_00425270_00431446
CI01000225_00404519_00407448.mRNA mRNA downstream 70434 404375 ~ 408629 (-) True CI01000225_00404519_00407448
CI01000225_00393863_00402338.mRNA mRNA downstream 76525 393863 ~ 402538 (-) True CI01000225_00393863_00402338
CI01000225_00383340_00392393.mRNA mRNA downstream 86670 383087 ~ 392393 (-) True CI01000225_00383340_00392393
CI01000225_00195825_00204991.mRNA mRNA downstream 274072 195709 ~ 204991 (-) True CI01000225_00195825_00204991
CI01000225_00553926_00616121.mRNA mRNA upstream 60525 553926 ~ 616121 (-) True CI01000225_00553926_00616121
CI01000225_00724320_00725003.mRNA mRNA upstream 230900 724301 ~ 725325 (-) False CI01000225_00724320_00725003

Expression Profile