RNA id: TU453046


Basic Information

Item Value
RNA id TU453046
length 737
lncRNA type antisense_over
GC content 0.35
exon number 3
gene id G395379
representative True

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 640943 ~ 671296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNCAGCGACTCCCTTTGTCAGCACAGTTCTGATGGGTTTGTCTTGTCCAGGTAAAGGTCTAAAGATGTCATTGCATTGGATCGGTGTGTCCTCTGTTGCTGCTCTCCTGGATTGTGTCTCAATCAGTCTCACCTCATGCTCATTACTGATCTCTCCACTCTCACTCTCTGTGATGTAGAGCTCTGTGTAGATCTCATTCAGGAGTGTTGGGTTTCCCTGCTGTGCTGTTCCTTCATACAGACACTCAAACTTCTTCATCAGATTTGATCTTAAAGTTTCGAGGACTTCATGGCTGTCGCCAGGATACATGTTTTTATTAATTTCTTGATTCATAAACTTGTCAGATTCCATTTTCTTACAGGCGGGTTCTGTTACATCTGGTCTGGATCGCAGAAATCGCCTTAAACAGCATGAAGTAAATAAATAATCAGATACTTGATATTTTGAATTGATTCTACAGTTTAGTTGCTGTGATTATATTAGAAATATAAAATGGATAGTTTCTATTGGTAATAAAGTGATATATTAATGTGCCCAATTTTTATATAGCTTGGCCATAAACCATTGATGCAGTAAAGTTAATGAACTGGATTATTTGATGGAAAAAAATGTTTTTTACTAATTATTGGTTCAAAAAAAAAAGAAGCAAGAATACATTAACAAATTAATAAACCACAATGTACACAAAGAAGCAAAGTCTGTTTTGTATTCTGTATCATAATCAAATCATATATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453027 lncRNA downstream 92604 548109 ~ 548339 (-) True G395363
TU453021 lncRNA downstream 102828 537733 ~ 538115 (-) True G395357
TU453020 lncRNA downstream 103855 536852 ~ 537088 (-) True G395356
TU452993 lncRNA downstream 109453 510889 ~ 531490 (-) False G395337
TU452990 lncRNA downstream 109453 524213 ~ 531490 (-) True G395337
TU453080 lncRNA upstream 53994 731200 ~ 731234 (-) True G395396
CI01000225_00553926_00616121.mRNA mRNA downstream 24822 553926 ~ 616121 (-) True CI01000225_00553926_00616121
CI01000225_00425270_00431446.mRNA mRNA downstream 209497 424599 ~ 431446 (-) True CI01000225_00425270_00431446
CI01000225_00404519_00407448.mRNA mRNA downstream 232314 404375 ~ 408629 (-) True CI01000225_00404519_00407448
CI01000225_00393863_00402338.mRNA mRNA downstream 238405 393863 ~ 402538 (-) True CI01000225_00393863_00402338
CI01000225_00383340_00392393.mRNA mRNA downstream 248550 383087 ~ 392393 (-) True CI01000225_00383340_00392393
CI01000225_00724320_00725003.mRNA mRNA upstream 53005 724301 ~ 725325 (-) False CI01000225_00724320_00725003

Expression Profile