RNA id: TCONS_00019320


Basic Information

Item Value
RNA id TCONS_00019320
length 890
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_009623
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2899611 ~ 2990676 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAAAGTTCAAGCTGTTTGAACAACATGGCGGCGCCCATGTAGCGGTGTGAATCTGTCAAAGTACATcgcaaaaattaagttttaaatgGAGGAACAAAATCAATAACGCCAAAGAAAAGCTAAATATACTCCCAAAGCTCCAGATGGCTGGTCTATGGTATTTGCGTCCTGGAGTGATGGCCGTGTGGAGGCCTGCTGTGTGTTTGTGGGGGCCGGGTCGGTCTAATCCTGTGATCCGAGTCAGCGTCTGCAGTCTGTTCAGTGAATCAGGTGTGTGGGAAAAAGAGTACAAGGCCGAGACGCGCCGTCGAGTGGAGCAGTGGTGGCACGGACGCATACAGGAGCAGTGGCGGACAGACGCGGAGGATCAGaGCTCCCGGAAGAAATTCTACGTCCTCTCCATGTTCCCATACCCATCTGGCCGACTGCATATGGGCCACGTGAGGGTTTACGCCATTAGCGACACCATCAGCCACTTCCAGAAGATGAGAGGCCATCAGGTGTTGAACCCGATGGGCTGGGATGCATTTGGTCTGCCGGCTGAAAACGCTGCCATCGAGCGAAATCTGGACCCGGAGGACTGGACCAGAAGTAACATCGAGTCCATGCGGACGCAGCTGGACAGTCTGGGCCTCTGCTTTAACTGGGATCGGGAGATCACCACGTGTCTGCCGGATTATTATAAGTGGACTCAGTATCTGTTTATCAAGATGTTTGAGGCTGGACTGGCCTATCAGAAAGAGGCTCTGGTGAATTGGGATCCGGTGGATCAGACGGTGCTTGCGGATGAACAGGTGGATGAAAACGGCTGCTCGTGGAGATCTGGAGCTCCTGTGGAACAGAAGATGCTCAAGCAGTGGTTCATCAAAACCACCAACTATGCCAAG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006429 leucyl-tRNA aminoacylation biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004823 leucine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-3 Predicted to enable leucine-tRNA ligase activity. Predicted to be involved in leucyl-tRNA aminoacylation and mitochondrial translation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human LARS2 (leucyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000149675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021867 lncRNA upstream 723560 2121684 ~ 2176051 (+) True XLOC_009615
TCONS_00021866 lncRNA upstream 741604 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00021865 lncRNA upstream 1038451 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021864 lncRNA upstream 1082063 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021868 lncRNA downstream 125429 3053424 ~ 3059091 (+) True XLOC_009625
TCONS_00021672 lncRNA downstream 208163 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021675 lncRNA downstream 219267 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021674 lncRNA downstream 219267 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021673 lncRNA downstream 219267 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00019319 mRNA upstream 55416 2843428 ~ 2844195 (+) True XLOC_009622
TCONS_00019318 mRNA upstream 55553 2840775 ~ 2844058 (+) False XLOC_009622
TCONS_00019316 mRNA upstream 66075 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019315 mRNA upstream 66075 2820340 ~ 2833536 (+) False XLOC_009621
TCONS_00019317 mRNA upstream 66213 2820362 ~ 2833398 (+) True XLOC_009621
TCONS_00019322 mRNA downstream 76427 3004422 ~ 3027240 (+) True XLOC_009624
TCONS_00019323 mRNA downstream 139139 3067134 ~ 3096745 (+) False XLOC_009626
TCONS_00019324 mRNA downstream 140085 3068080 ~ 3095912 (+) True XLOC_009626
TCONS_00019325 mRNA downstream 257546 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019329 mRNA downstream 1054595 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019314 other upstream 170122 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 615437 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 1158553 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 1679049 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 1686823 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019326 other downstream 425506 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 1769818 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 1842384 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 1846138 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 1946369 4874364 ~ 4874481 (+) True XLOC_009654

Expression Profile

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