RNA id: TCONS_00021868


Basic Information

Item Value
RNA id TCONS_00021868
length 377
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_009625
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3053424 ~ 3059091 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCCGGCATCACGGCGTTTCTTCTAATTAGGGCCTTGTGTAGGAATTCTGCTGCTGGTGAAAAGAACTGTGCCATGTTTTTCCAGCCCTGGACTCCGAATCCTGAACGCACATTGTAGTAAGTGATGTTCTTCTTCTGGTAGTAGTCCTTCCATTTCTCTTCCTCTAAGGACAACGGCACAGCGTTCACAATGTGCGTGATGTTCAtctttttcagtttggctttgtTCCTCGCTGTTTTCCTGCACAAGAACACAACAACATCATCAATTTCCCTTCACTTTCACTGACTGAAAAGCTGAATTCACGATGAAGAACACACAGCGCTCACTCTGGAGTTCTGTAAATCTACAAATGCTGAATTTAACAAAGTTTAC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0030878 thyroid gland development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021867 lncRNA upstream 877373 2121684 ~ 2176051 (+) True XLOC_009615
TCONS_00021866 lncRNA upstream 895417 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00021865 lncRNA upstream 1192264 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021864 lncRNA upstream 1235876 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021863 lncRNA upstream 1235876 1776515 ~ 1817548 (+) False XLOC_009613
TCONS_00021672 lncRNA downstream 77067 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021675 lncRNA downstream 88171 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021674 lncRNA downstream 88171 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021673 lncRNA downstream 88171 3147262 ~ 3149776 (+) False XLOC_009628
TCONS_00021869 lncRNA downstream 88270 3147361 ~ 3149817 (+) True XLOC_009628
TCONS_00019322 mRNA upstream 26184 3004422 ~ 3027240 (+) True XLOC_009624
TCONS_00019321 mRNA upstream 62748 2905150 ~ 2990676 (+) True XLOC_009623
TCONS_00019320 mRNA upstream 125429 2899611 ~ 2927995 (+) False XLOC_009623
TCONS_00019319 mRNA upstream 209229 2843428 ~ 2844195 (+) True XLOC_009622
TCONS_00019318 mRNA upstream 209366 2840775 ~ 2844058 (+) False XLOC_009622
TCONS_00019323 mRNA downstream 8043 3067134 ~ 3096745 (+) False XLOC_009626
TCONS_00019324 mRNA downstream 8989 3068080 ~ 3095912 (+) True XLOC_009626
TCONS_00019325 mRNA downstream 126450 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019329 mRNA downstream 923499 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019330 mRNA downstream 996240 4055331 ~ 4071526 (+) True XLOC_009638
TCONS_00019314 other upstream 323935 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 769250 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 1312366 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 1832862 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 1840636 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019326 other downstream 294410 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 1638722 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 1711288 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 1715042 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 1815273 4874364 ~ 4874481 (+) True XLOC_009654

Expression Profile

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