RNA id: TCONS_00021674


Basic Information

Item Value
RNA id TCONS_00021674
length 1838
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_009628
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3147262 ~ 3149817 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatgttttcggctgatatttttcatttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATCccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagagacgcattagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAGATTAGAAGATAGAAACTGTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAGCTATATGATTATCTTAAACTGATCTACAGGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGTCATCTTGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGATGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021672 lncRNA upstream 10019 3136158 ~ 3137243 (+) True XLOC_009627
TCONS_00021868 lncRNA upstream 88171 3053424 ~ 3059091 (+) True XLOC_009625
TCONS_00021867 lncRNA upstream 971211 2121684 ~ 2176051 (+) True XLOC_009615
TCONS_00021866 lncRNA upstream 989255 2121671 ~ 2158007 (+) False XLOC_009615
TCONS_00021865 lncRNA upstream 1286102 1860384 ~ 1861160 (+) True XLOC_009614
TCONS_00021870 lncRNA downstream 32973 3182749 ~ 3192150 (+) True XLOC_009629
TCONS_00021871 lncRNA downstream 308439 3458215 ~ 3461793 (+) True XLOC_009632
TCONS_00021676 lncRNA downstream 441635 3591411 ~ 3593405 (+) True XLOC_009633
TCONS_00021677 lncRNA downstream 508551 3658327 ~ 3659417 (+) True XLOC_009634
TCONS_00019327 lncRNA downstream 659818 3809594 ~ 3815081 (+) True XLOC_009635
TCONS_00019323 mRNA upstream 50517 3067134 ~ 3096745 (+) False XLOC_009626
TCONS_00019324 mRNA upstream 51350 3068080 ~ 3095912 (+) True XLOC_009626
TCONS_00019322 mRNA upstream 120022 3004422 ~ 3027240 (+) True XLOC_009624
TCONS_00019321 mRNA upstream 156586 2905150 ~ 2990676 (+) True XLOC_009623
TCONS_00019320 mRNA upstream 219267 2899611 ~ 2927995 (+) False XLOC_009623
TCONS_00019325 mRNA downstream 35765 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019329 mRNA downstream 832814 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019330 mRNA downstream 905555 4055331 ~ 4071526 (+) True XLOC_009638
TCONS_00019331 mRNA downstream 928464 4078240 ~ 4088460 (+) False XLOC_009639
TCONS_00019332 mRNA downstream 928832 4078608 ~ 4131804 (+) False XLOC_009639
TCONS_00019314 other upstream 417773 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 863088 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 1406204 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 1926700 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019298 other upstream 1934474 1212674 ~ 1212788 (+) True XLOC_009605
TCONS_00019326 other downstream 203725 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019348 other downstream 1548037 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 1620603 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 1624357 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 1724588 4874364 ~ 4874481 (+) True XLOC_009654

Expression Profile

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