RNA id: TCONS_00019327


Basic Information

Item Value
RNA id TCONS_00019327
length 908
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_009635
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3809594 ~ 3815081 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGGACTCTGAAAGCAGGCAGGATGAGCTGGTAGGGAGCAGGACCTGAGGAGCAGCTCTGACGGGTCGTGAGATCTCTGAGGAGACCCCATCTCATGGCCGATGAGCAATTCATCTGGAGTTAATGTGCTGCAGCTGTGCTCTAATGAGCTGAGGCCAGAGGAGAGACTCCACACCGCTGCGACACGCTCTGCATTCATCACTTCGACTCCTCCGTTTCACACATCCAAAACCTGGATATCACACCATCAGGCCACACGGGTCTCACACTGTCCACAGCTCCAACGTCACGTCTGTGTTTCTAGATGTCGGATTTCAGATGCACCGCTTTTCTCCTCTTAATCGTCCCTCATTCCCTTCCCTGTGATGGACACACGTGTGTTTTTTCCTGTCAGCAATGAACAGTAATCCTACATGAACACAGACAGTTCACACACCAGTCAAGCCTGCATGGCTGATCTGAAGAGCTCTGAACTAACAACTCGAACAGAGCATTACTGATTTAAGTACCGTACAGTCATCAGGGACACCATGATCTCATTAGTATTCATAGCTATTTGTATGTTAAGTGCCATTCGAGTGCATACTGTacttgtgtttgtatgtttgccATTGTATATCTAAAAAGCTACAGTGTTTTATGGAGGCCTTGTTGCAATTGTATATGTCAGTACTgagtaatgttatttattttttaagatttgaTTCAGGGTTATTGCATATGATTATGTATCAATTGCAATTGTTAGTATGTGATGTGAACACTCAAAAATATgtatgctgtttgttcaaactacctatttaaaatgagctgaaacaacacaattcttgaggtttttttatgttcaattcacttaaatttgtataaaaaaataaaaaaaactaataagctattttaattccttcat

Function

GO:

id name namespace
GO:0044088 regulation of vacuole organization biological_process
GO:0000045 autophagosome assembly biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1905037 autophagosome organization biological_process
GO:1902116 negative regulation of organelle assembly biological_process
GO:2000785 regulation of autophagosome assembly biological_process
GO:1901097 negative regulation of autophagosome maturation biological_process
GO:0016242 negative regulation of macroautophagy biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0070985 transcription factor TFIIK complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021677 lncRNA upstream 150177 3658327 ~ 3659417 (+) True XLOC_009634
TCONS_00021676 lncRNA upstream 216189 3591411 ~ 3593405 (+) True XLOC_009633
TCONS_00021871 lncRNA upstream 347801 3458215 ~ 3461793 (+) True XLOC_009632
TCONS_00021870 lncRNA upstream 617444 3182749 ~ 3192150 (+) True XLOC_009629
TCONS_00021869 lncRNA upstream 659777 3147361 ~ 3149817 (+) True XLOC_009628
TCONS_00019328 lncRNA downstream 112985 3928066 ~ 3932047 (+) False XLOC_009636
TCONS_00021872 lncRNA downstream 113008 3928089 ~ 3948317 (+) True XLOC_009636
TCONS_00019333 lncRNA downstream 272710 4087791 ~ 4089002 (+) True XLOC_009639
TCONS_00021678 lncRNA downstream 317456 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021679 lncRNA downstream 318675 4133756 ~ 4139166 (+) False XLOC_009640
TCONS_00019325 mRNA upstream 619795 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019323 mRNA upstream 712849 3067134 ~ 3096745 (+) False XLOC_009626
TCONS_00019324 mRNA upstream 713682 3068080 ~ 3095912 (+) True XLOC_009626
TCONS_00019322 mRNA upstream 782354 3004422 ~ 3027240 (+) True XLOC_009624
TCONS_00019321 mRNA upstream 818918 2905150 ~ 2990676 (+) True XLOC_009623
TCONS_00019329 mRNA downstream 167509 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019330 mRNA downstream 240250 4055331 ~ 4071526 (+) True XLOC_009638
TCONS_00019331 mRNA downstream 263159 4078240 ~ 4088460 (+) False XLOC_009639
TCONS_00019332 mRNA downstream 263527 4078608 ~ 4131804 (+) False XLOC_009639
TCONS_00019334 mRNA downstream 317456 4132537 ~ 4168294 (+) False XLOC_009640
TCONS_00019326 other upstream 455977 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1080105 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 1525420 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2068536 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 2589032 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 882732 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 955298 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 959052 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 1059283 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 1369321 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

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